Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0468 Trochodendron aralioides HOM05D003286 ORTHO05D002463 2.0e-55 218.8 105 100.0
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.5e-42 176.0 86 98.8
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.5e-42 176.0 86 98.8
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 3.1e-40 168.3 83 97.6
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 9.1e-40 166.8 86 94.2
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.2e-20 103.2 74 62.2
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.2e-20 103.2 74 62.2
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 8.8e-19 97.1 74 59.5
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 1.5e-18 96.3 103 49.5
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 2.6e-18 95.5 90 50.0
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 7.5e-18 94.0 75 60.0
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 1.3e-17 93.2 74 58.1
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 1.3e-17 93.2 75 57.3
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 1.7e-17 92.8 71 60.6
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 2.2e-17 92.4 75 58.7
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 2.8e-17 92.0 75 58.7
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 2.8e-17 92.0 78 52.6
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 6.3e-17 90.9 74 58.1
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 8.3e-17 90.5 89 49.4
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 8.3e-17 90.5 78 55.1
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 1.1e-16 90.1 74 55.4
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 2.4e-16 89.0 74 52.7
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 2.4e-16 89.0 74 56.8
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 2.4e-16 89.0 71 59.2
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 2.4e-16 89.0 91 50.5
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 3.1e-16 88.6 71 59.2
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 3.1e-16 88.6 71 54.9
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 4.1e-16 88.2 96 49.0
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 4.1e-16 88.2 82 50.0
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 1.2e-15 86.7 79 51.9
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 2.0e-15 85.9 74 56.8
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 2.7e-15 85.5 74 56.8
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 2.7e-15 85.5 71 54.9
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 3.5e-15 85.1 74 56.8
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 3.5e-15 85.1 79 50.6
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 4.5e-15 84.7 87 46.0
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 4.5e-15 84.7 75 49.3
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 5.9e-15 84.3 77 54.5
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 5.9e-15 84.3 77 54.5
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 7.7e-15 84.0 75 56.0
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 7.7e-15 84.0 74 54.1
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 7.7e-15 84.0 71 52.1
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 1.3e-14 83.2 75 53.3
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 1.3e-14 83.2 94 44.7
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.3e-14 83.2 82 47.6
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 2.2e-14 82.4 77 54.5
Sc07g0002810 Simmondsia chinensis HOM05D003286 ORTHO05D002463 2.2e-14 82.4 102 45.1
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 2.2e-14 82.4 71 52.1
CDE04G0028 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 2.9e-14 82.0 72 51.4
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 2.9e-14 82.0 75 53.3
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 3.8e-14 81.6 71 57.7
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 5.0e-14 81.3 71 53.5
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 6.5e-14 80.9 75 53.3
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 6.5e-14 80.9 74 50.0
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.1e-13 80.1 71 53.5
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.1e-13 80.1 71 53.5
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.1e-13 80.1 74 54.1
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 1.1e-13 80.1 74 51.4
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 1.5e-13 79.7 74 51.4
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 1.9e-13 79.3 71 52.1
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 2.5e-13 79.0 75 49.3
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 3.2e-13 78.6 71 53.5
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 4.2e-13 78.2 70 52.9
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 5.5e-13 77.8 75 53.3
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 5.5e-13 77.8 75 53.3
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 5.5e-13 77.8 75 53.3
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 9.5e-13 77.0 75 44.0
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 9.5e-13 77.0 74 51.4
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 9.5e-13 77.0 88 47.7
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 1.2e-12 76.6 71 52.1
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.2e-12 76.6 71 50.7
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 1.6e-12 76.3 71 49.3
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 1.6e-12 76.3 75 48.0
Medtr8g019530 Medicago truncatula HOM05D003286 ORTHO05D002463 1.6e-12 76.3 70 50.0
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 1.6e-12 76.3 71 50.7
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 2.1e-12 75.9 74 50.0
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 3.6e-12 75.1 87 41.4
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 3.6e-12 75.1 72 50.0
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 4.7e-12 74.7 93 40.9
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 6.1e-12 74.3 80 47.5
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 8.0e-12 73.9 71 43.7
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 8.0e-12 73.9 60 56.7
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 8.0e-12 73.9 93 37.6
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 1.4e-11 73.2 71 46.5
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 2.3e-11 72.4 71 45.1
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 2.3e-11 72.4 83 43.4
AT4G05250 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.0e-11 72.0 73 45.2
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 3.0e-11 72.0 70 44.3
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 3.0e-11 72.0 68 50.0
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 3.0e-11 72.0 73 49.3
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.0e-11 71.6 71 47.9
Nitab4.5_0002214g0070 Nicotiana tabacum HOM05D003286 ORTHO05D002463 4.0e-11 71.6 74 43.2
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.2e-11 71.2 74 45.9
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 5.2e-11 71.2 71 46.5
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 5.2e-11 71.2 72 40.3
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 5.2e-11 71.2 71 47.9
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.8e-11 70.9 71 47.9
BolC2t09988H Brassica oleracea HOM05D003286 ORTHO05D002463 6.8e-11 70.9 68 50.0
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.8e-11 70.9 72 43.1
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 8.8e-11 70.5 71 45.1
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 8.8e-11 70.5 71 45.1
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 8.8e-11 70.5 75 45.3
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.8e-11 70.5 72 43.1
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 1.2e-10 70.1 77 44.2
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 1.2e-10 70.1 70 42.9
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 1.2e-10 70.1 70 42.9
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 1.2e-10 70.1 70 42.9
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 1.2e-10 70.1 70 42.9
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 1.2e-10 70.1 70 42.9
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 1.2e-10 70.1 70 42.9
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 1.2e-10 70.1 70 42.9
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 1.2e-10 70.1 70 42.9
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.2e-10 70.1 69 47.8
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 1.5e-10 69.7 70 42.9
Phvul.007G052250 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 1.5e-10 69.7 84 41.7
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.0e-10 69.3 71 47.9
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 3.4e-10 68.6 88 38.6
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 7.5e-10 67.4 71 42.3
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 9.8e-10 67.0 87 41.4
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 9.8e-10 67.0 85 37.6
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 9.8e-10 67.0 75 38.7
Hund01018 Selenicereus undatus HOM05D003286 ORTHO05D002463 1.7e-09 66.2 83 45.8
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.9e-09 64.7 75 38.7
VMungo0720G2163 Vigna mungo HOM05D003286 ORTHO05D002463 4.9e-09 64.7 84 36.9
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.1e-08 63.5 74 43.2
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 1.1e-08 63.5 72 40.3
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.4e-08 62.4 75 41.3
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 3.1e-08 62.0 71 39.4
CARHR252260 Cardamine hirsuta HOM05D003286 ORTHO05D002463 9.2e-08 60.5 72 36.1
PSO017G4339 Papaver somniferum HOM05D003286 ORTHO05D002463 9.2e-08 60.5 80 41.2
Zm00001eb225210 Zea mays HOM05D003286 ORTHO05D002463 1.2e-07 60.1 107 33.6
CDE04G2878 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 1.6e-07 59.7 72 38.9
PSO017G6437 Papaver somniferum HOM05D003286 ORTHO05D002463 1.6e-07 59.7 76 40.8
Phvul.007G052200 Phaseolus vulgaris HOM05D003286 ORTHO05D050268 2.0e-07 59.3 73 39.7
Phvul.007G052400 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 2.7e-07 58.9 81 40.7
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 4.5e-07 58.2 69 40.6
Eucgr.D00805 Eucalyptus grandis HOM05D003286 ORTHO05D002463 5.9e-07 57.8 52 50.0
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 5.9e-07 57.8 53 52.8
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 1.0e-06 57.0 114 35.1
Ca_10980_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.0e-06 57.0 94 36.2
Ca_11000_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.0e-06 57.0 94 36.2
AT4G05240 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.3e-06 55.8 70 35.7
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 2.9e-06 55.5 74 33.8
CARHR252270 Cardamine hirsuta HOM05D003286 ORTHO05D002463 3.8e-06 55.1 52 44.2
Thhalv10029479m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.8e-06 55.1 64 43.8
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.6e-06 54.3 74 36.5
Ca_10982_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 6.6e-06 54.3 75 41.3
Ca_11002_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 6.6e-06 54.3 75 41.3
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 8.6e-06 53.9 74 35.1
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.6e-06 53.9 88 30.7
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 8.6e-06 53.9 71 36.6
Medtr1g105515 Medicago truncatula HOM05D003286 ORTHO05D002463 8.6e-06 53.9 75 34.7


User provided reference genes

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