Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 8.3e-227 790.0 401 100.0
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.9e-194 682.6 374 91.4
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.6e-167 592.4 372 79.3
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 5.9e-164 581.3 353 81.9
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 6.5e-163 577.8 372 77.7
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 8.5e-163 577.4 374 77.3
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 2.5e-162 575.9 372 75.3
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 3.2e-162 575.5 372 75.8
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 5.5e-162 574.7 362 79.6
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 6.1e-161 571.2 372 75.8
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 1.4e-160 570.1 372 76.3
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 3.0e-160 568.9 372 74.7
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 1.5e-159 566.6 372 75.3
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 9.7e-159 563.9 372 75.5
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 1.3e-158 563.5 374 75.9
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 4.8e-158 561.6 394 71.6
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 4.8e-158 561.6 366 74.3
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 6.3e-158 561.2 366 74.9
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.1e-157 560.5 372 75.5
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 1.8e-157 559.7 372 74.2
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 1.8e-157 559.7 366 75.4
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 7.7e-156 554.3 366 75.1
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 1.0e-155 553.9 372 74.5
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.3e-155 553.5 366 74.9
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 1.3e-155 553.5 372 72.6
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 3.8e-155 552.0 371 73.6
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 8.5e-155 550.8 374 73.3
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 4.7e-153 545.0 373 73.7
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 6.1e-153 544.7 369 72.4
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 3.0e-152 542.3 401 68.3
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 3.0e-152 542.3 364 72.0
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 4.0e-152 542.0 367 73.3
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 1.2e-151 540.4 373 72.1
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 2.0e-151 539.7 363 74.1
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 4.4e-151 538.5 372 71.0
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 7.5e-151 537.7 373 72.4
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 1.3e-150 537.0 374 73.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 2.2e-150 536.2 372 70.7
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 1.4e-149 533.5 374 70.1
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.4e-149 533.5 351 73.2
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.8e-149 533.1 379 70.7
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 3.1e-149 532.3 372 69.1
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 9.1e-149 530.8 372 72.8
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 1.2e-148 530.4 356 72.5
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 2.7e-148 529.3 366 70.8
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 4.5e-148 528.5 371 72.8
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 7.7e-148 527.7 327 78.6
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 7.7e-148 527.7 437 63.4
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 7.7e-148 527.7 364 70.6
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.0e-147 527.3 366 70.2
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.7e-147 526.6 423 64.1
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 6.5e-147 524.6 371 71.7
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 6.5e-147 524.6 372 71.5
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 8.5e-147 524.2 364 73.6
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 8.5e-147 524.2 368 73.4
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 3.2e-146 522.3 395 68.9
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 1.2e-145 520.4 371 71.4
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 1.2e-145 520.4 365 71.2
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 8.0e-145 517.7 341 74.8
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 1.4e-144 516.9 396 67.2
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 1.4e-144 516.9 360 73.9
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 2.3e-144 516.2 365 70.1
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 2.3e-144 516.2 396 67.2
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 5.2e-144 515.0 372 71.0
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 8.8e-144 514.2 374 70.9
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.2e-143 513.8 372 70.7
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 2.6e-143 512.7 373 70.2
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 4.4e-143 511.9 374 66.6
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 4.4e-143 511.9 374 66.6
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 5.7e-143 511.5 374 66.6
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 5.7e-143 511.5 374 66.6
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 9.8e-143 510.8 354 72.9
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 1.3e-142 510.4 374 66.6
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.3e-142 510.4 396 64.4
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 2.2e-142 509.6 372 66.9
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 6.3e-142 508.1 377 70.0
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 1.1e-141 507.3 372 66.4
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 2.4e-141 506.1 372 66.4
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 3.1e-141 505.8 374 66.6
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 3.1e-141 505.8 374 67.1
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 5.4e-141 505.0 372 66.1
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 7.0e-141 504.6 372 66.1
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 7.0e-141 504.6 372 66.1
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 7.0e-141 504.6 372 66.1
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 1.6e-140 503.4 369 70.7
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 2.5e-138 496.1 317 74.8
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 6.1e-137 491.5 374 66.0
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 1.8e-136 490.0 374 64.7
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 5.2e-136 488.4 364 68.1
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 8.9e-136 487.6 372 67.2
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.4e-133 480.3 352 69.3
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 3.5e-132 475.7 351 67.2
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 5.0e-131 471.9 370 66.2
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 6.2e-129 464.9 372 66.4
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 1.8e-128 463.4 372 65.6
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.3e-128 463.0 361 65.9
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 4.0e-128 462.2 372 64.5
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.5e-127 460.3 372 64.5
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.6e-127 459.5 355 65.9
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 4.9e-126 455.3 374 63.1
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 1.4e-125 453.8 372 63.7
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 1.3e-123 447.2 298 73.8
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 1.3e-123 447.2 448 55.4
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 1.1e-122 444.1 372 61.6
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 1.9e-122 443.4 362 62.2
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 3.3e-122 442.6 367 59.7
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.6e-121 439.1 372 62.9
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 4.7e-121 438.7 361 62.9
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 1.8e-120 436.8 270 81.1
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 4.0e-120 435.6 372 62.4
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 1.5e-119 433.7 269 76.6
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 3.7e-118 429.1 269 77.0
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.4e-118 428.3 366 58.2
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.4e-118 428.3 366 58.2
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.4e-117 427.2 385 55.1
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 4.3e-114 415.6 291 69.8
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 3.6e-113 412.5 369 58.5
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 1.3e-107 394.0 367 54.8
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 6.4e-102 375.2 372 55.1
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.4e-101 374.0 372 54.8
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 7.1e-101 371.7 222 81.1
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 1.5e-98 364.0 369 54.7
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 7.3e-98 361.7 264 68.6
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 5.3e-96 355.5 401 51.6
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 3.2e-93 346.3 347 56.2
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 1.6e-84 317.4 190 78.9
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 3.0e-75 286.6 182 81.3
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.3e-73 281.2 172 80.2
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 4.2e-69 266.2 174 75.9
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 2.3e-67 260.4 226 58.0
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 1.8e-64 250.8 169 74.6
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.1e-48 195.3 340 33.2
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 2.0e-47 194.1 167 63.5
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.4e-45 185.3 341 34.6
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.0e-43 181.8 340 32.4
Oeu010988.1 Olea europaea HOM05D003674 ORTHO05D004226 1.8e-43 181.0 125 71.2
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.8e-43 181.0 342 33.3
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.7e-42 175.3 341 32.6
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.2e-41 174.1 342 33.0
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 1.8e-40 171.0 120 70.0
SHI10399 Sapria himalayana HOM05D003674 ORTHO05D004226 4.1e-40 169.9 326 37.4
MSTRG.14335 Avicennia marina HOM05D003674 ORTHO05D004226 2.2e-38 164.1 126 61.9
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 1.6e-36 157.9 113 69.0
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.5e-34 151.4 348 30.5
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.6e-34 150.6 292 30.8
Nitab4.5_0000638g0280 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.4e-32 144.1 146 57.5
Nitab4.5_0012835g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.7e-30 137.9 149 49.0
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.8e-30 136.7 89 78.7
SHI10401 Sapria himalayana HOM05D003674 ORTHO05D004226 6.5e-30 136.0 113 62.8
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 4.2e-29 133.3 83 68.7
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 7.2e-29 132.5 96 67.7
Oeu030714.1 Olea europaea HOM05D003674 ORTHO05D004226 2.4e-24 117.5 93 69.9
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.9e-23 112.8 295 28.1
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 1.3e-22 111.7 65 81.5
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 4.7e-20 103.2 163 31.9
SEGI_04644 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 3.0e-14 84.0 72 58.3
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 9.8e-10 68.9 136 30.9
SEGI_38669 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 1.3e-09 68.6 59 64.4
PRCOL_00001301 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 3.7e-09 67.0 333 25.2
BcaC01g01194 Brassica carinata HOM05D003674 ORTHO05D004226 1.1e-08 65.5 54 55.6
MCO16G144 Micromonas commoda HOM05D009333 ORTHO05D011489 1.1e-08 65.5 231 29.4
MCO14G402 Micromonas commoda HOM05D009333 ORTHO05D011489 9.2e-08 62.4 267 26.2
Cre12.g532350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 2.0e-07 61.2 261 24.9
MCO03G344 Micromonas commoda HOM05D009333 ORTHO05D011489 3.5e-07 60.5 226 27.0
PRCOL_00003146 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 4.6e-07 60.1 207 27.1
Nitab4.5_0012835g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 6.6e-06 56.2 119 36.1


User provided reference genes

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