Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.7e-243 845.1 500 100.0
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.7e-240 835.9 500 95.4
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 6.8e-194 681.0 507 70.0
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.7e-190 669.1 505 68.9
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 5.2e-186 654.8 504 67.9
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 8.9e-186 654.1 505 69.5
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 5.8e-185 651.4 506 69.0
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.3e-184 650.2 503 73.6
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.9e-184 649.0 508 68.1
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.9e-184 649.0 505 68.9
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 6.6e-181 637.9 507 67.9
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 9.5e-180 634.0 508 66.1
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.2e-179 633.6 503 65.6
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.6e-179 632.1 503 67.2
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 3.6e-179 632.1 503 65.6
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 6.2e-179 631.3 507 67.9
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.1e-178 630.6 504 69.6
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.8e-178 629.8 521 64.5
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 5.2e-178 628.2 504 67.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-177 627.1 509 64.8
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 1.2e-177 627.1 504 66.9
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 3.4e-177 625.5 504 68.1
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 3.4e-177 625.5 504 68.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 7.6e-177 624.4 503 66.4
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.3e-176 623.6 510 66.7
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.9e-176 622.5 504 65.7
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.9e-176 622.5 505 66.5
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.8e-176 622.1 510 67.5
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-175 620.5 499 65.1
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-175 619.4 503 64.2
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 2.4e-175 619.4 517 64.2
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 4.2e-175 618.6 504 66.1
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 4.2e-175 618.6 372 84.4
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 5.4e-175 618.2 504 64.9
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 9.2e-175 617.5 503 65.0
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 2.7e-174 615.9 507 65.9
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.5e-174 615.5 507 64.1
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.5e-174 615.5 506 66.0
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 6.0e-174 614.8 507 63.9
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 7.8e-174 614.4 504 65.7
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 7.8e-174 614.4 506 65.8
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.0e-173 614.0 507 64.7
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.0e-173 614.0 507 66.3
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.7e-173 613.2 531 62.0
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.9e-172 609.8 504 67.7
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 2.5e-172 609.4 504 64.3
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.5e-172 609.4 514 65.8
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 4.3e-172 608.6 504 65.3
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 5.6e-172 608.2 508 63.6
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.8e-171 605.9 505 63.8
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.8e-171 605.9 504 64.9
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.6e-171 605.5 490 64.7
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 6.2e-171 604.7 502 68.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.4e-170 603.6 369 80.8
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.4e-170 602.8 503 64.6
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 5.3e-170 601.7 504 63.3
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 9.0e-170 600.9 371 79.2
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 9.0e-170 600.9 547 62.7
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.2e-169 600.5 505 63.6
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.2e-169 600.5 484 66.9
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.5e-169 600.1 504 66.1
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 2.6e-169 599.4 504 63.5
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 5.8e-169 598.2 375 78.4
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 5.8e-169 598.2 505 63.0
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.3e-168 597.0 555 60.0
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.3e-168 597.0 506 64.6
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.3e-168 597.0 504 65.1
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.2e-168 596.3 504 63.7
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.2e-168 596.3 505 65.3
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.9e-168 595.9 372 79.6
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 3.8e-168 595.5 504 64.5
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.1e-167 594.0 506 63.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.4e-167 593.6 503 62.6
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.4e-167 593.6 504 65.5
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.9e-167 593.2 517 64.2
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.4e-167 592.8 372 79.8
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 3.2e-167 592.4 503 63.6
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 4.2e-167 592.0 504 62.1
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 4.2e-167 592.0 513 62.8
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 5.4e-167 591.7 506 62.5
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 5.4e-167 591.7 506 62.5
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 5.4e-167 591.7 504 62.9
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.7e-166 589.3 504 62.7
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 3.5e-166 589.0 503 62.6
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 3.5e-166 589.0 505 62.4
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 1.7e-165 586.6 502 62.9
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 2.3e-165 586.3 506 64.0
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 5.1e-165 585.1 506 64.2
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 6.6e-165 584.7 489 65.8
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 8.7e-165 584.3 504 65.1
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 2.5e-164 582.8 372 78.0
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 2.8e-163 579.3 502 61.8
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 4.8e-163 578.6 507 65.9
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.2e-163 578.2 499 62.3
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 1.8e-162 576.6 373 75.6
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 2.4e-162 576.2 497 66.0
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 6.9e-162 574.7 516 62.6
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 9.0e-162 574.3 382 75.1
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.3e-160 570.5 503 61.0
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 3.8e-160 568.9 504 62.5
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 3.8e-160 568.9 497 64.6
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.9e-159 566.6 506 65.8
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 4.2e-159 565.5 443 67.9
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.1e-158 563.1 503 61.2
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.5e-156 557.0 469 65.2
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.9e-156 556.6 506 66.2
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.5e-156 556.2 333 81.4
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 3.3e-156 555.8 510 61.2
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 5.6e-156 555.1 495 63.6
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 5.6e-156 555.1 506 66.2
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 5.6e-156 555.1 337 79.8
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 9.6e-156 554.3 523 59.1
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 9.6e-156 554.3 371 73.6
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 6.2e-155 551.6 504 60.3
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 7.6e-153 544.7 510 58.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.4e-151 540.4 518 57.7
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.7e-150 536.2 344 77.0
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 6.0e-150 535.0 513 58.3
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.5e-145 520.4 279 88.2
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.3e-144 517.3 274 90.5
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 7.1e-143 511.5 496 55.8
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 3.5e-142 509.2 438 64.2
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 3.0e-141 506.1 473 58.8
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.1e-140 504.2 504 56.7
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.5e-140 503.8 331 73.7
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 8.2e-139 498.0 532 55.6
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-138 497.3 473 58.1
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.4e-137 492.7 383 67.6
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 5.9e-137 491.9 350 68.6
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.7e-134 483.0 497 56.9
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 7.9e-134 481.5 330 70.3
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.0e-133 481.1 517 52.6
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 9.7e-132 474.6 333 70.3
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.5e-128 461.5 395 63.5
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.4e-127 458.0 350 67.7
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 4.8e-123 445.7 415 55.7
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.7e-120 437.2 491 53.8
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.7e-120 437.2 588 48.8
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.5e-113 412.9 484 52.1
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 7.5e-108 395.2 510 47.5
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.2e-105 387.9 287 69.0
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 8.5e-104 381.7 396 53.3
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 6.1e-102 375.6 337 56.7
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 2.8e-99 366.7 359 53.2
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.6e-81 306.2 167 90.4
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 7.1e-74 282.3 266 54.1
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.5e-63 248.1 484 38.8
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 4.3e-55 219.9 388 36.9
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.3e-40 171.8 271 41.3
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.3e-40 171.0 371 34.2
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 6.7e-40 169.5 123 70.7
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.6e-30 138.3 81 80.2
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.8e-29 134.8 129 58.1
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-24 118.6 145 45.5
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.6e-22 111.7 107 58.9
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 6.3e-22 109.8 103 59.2
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 3.4e-12 77.4 231 31.6
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 2.2e-11 74.7 243 30.0
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.4e-08 65.5 208 24.0
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.8e-08 65.1 205 24.9
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 3.0e-08 64.3 204 25.5
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 3.7e-06 57.4 53 47.2


User provided reference genes

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