Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1924.1 972 100.0
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1444.5 998 74.8
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1415.2 996 73.8
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1399.0 974 74.1
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1395.2 992 72.6
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1393.6 989 73.2
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1382.1 963 74.2
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1360.9 998 70.4
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1351.3 947 73.4
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1348.6 1000 70.4
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1347.4 995 70.5
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1345.5 970 72.2
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1341.3 938 73.6
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1340.5 987 70.9
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1334.3 930 74.0
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1329.7 930 73.8
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1324.7 994 69.3
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1324.3 977 70.4
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1324.3 1005 69.5
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1319.3 941 71.5
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1318.1 984 69.6
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1315.4 1003 68.6
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1315.1 937 72.1
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1314.7 1003 68.6
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1300.4 943 70.6
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1299.6 1000 67.6
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1294.6 989 68.3
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1293.9 989 68.1
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1290.4 982 67.5
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1289.6 989 68.1
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1289.6 943 71.5
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1282.7 908 72.4
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1282.3 967 69.5
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1278.5 971 68.9
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1277.3 983 67.8
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1275.0 946 70.4
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1272.3 1001 67.5
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1269.6 993 67.2
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1268.4 931 69.5
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1264.6 968 68.3
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1263.1 930 69.4
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1262.3 956 68.5
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1261.1 912 72.1
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1260.4 940 69.1
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1257.7 907 70.3
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1253.0 933 69.9
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1251.5 995 67.3
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1251.5 992 66.6
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1250.7 936 69.3
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1250.3 910 69.9
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1248.8 966 67.3
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1248.4 907 71.0
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1247.6 937 69.6
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1244.6 994 66.5
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1243.8 957 67.3
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1243.8 960 67.8
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1243.4 969 66.5
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1233.0 907 69.3
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1228.0 1098 61.2
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1223.8 1014 64.2
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1214.5 981 64.7
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1206.0 942 67.5
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1204.5 844 73.2
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1203.7 771 77.3
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1201.0 949 67.3
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1198.3 969 66.4
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1191.4 899 69.7
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1176.0 931 65.8
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1175.6 909 65.2
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1164.8 853 69.9
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1157.9 934 64.1
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1154.4 904 65.9
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1146.3 920 62.8
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1138.6 907 65.2
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1135.6 953 63.7
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1135.2 960 62.9
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1124.4 964 62.1
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1124.4 907 64.3
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1123.2 904 64.4
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1122.5 936 64.2
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1120.9 995 61.2
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1116.3 904 64.2
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1110.9 904 64.2
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1098.2 918 62.0
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1095.5 966 59.9
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1093.6 854 65.9
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1088.2 908 62.2
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1083.9 953 61.8
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1076.6 909 61.6
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1076.6 953 62.4
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 1.7e-310 1069.3 913 62.0
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 1.7e-310 1069.3 924 61.3
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 8.0e-300 1033.9 813 65.6
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 6.8e-299 1030.8 932 58.8
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 2.1e-279 966.1 772 65.7
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 6.2e-276 954.5 802 63.3
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.2e-273 946.0 652 74.7
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.7e-265 919.8 606 76.7
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 1.0e-257 894.0 593 76.9
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 1.1e-251 874.0 909 50.8
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 8.5e-241 837.8 924 48.2
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 9.7e-229 797.7 713 61.0
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.2e-228 796.6 540 75.7
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 1.1e-227 794.3 629 66.3
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 2.6e-205 719.9 864 49.4
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 6.2e-191 672.2 641 56.2
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 8.0e-191 671.8 941 43.8
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 3.5e-186 656.4 722 49.0
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 7.3e-184 648.7 590 59.3
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 6.2e-175 619.0 396 77.0
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 1.3e-169 601.3 471 65.2
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 4.9e-164 582.8 563 56.3
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 1.2e-157 561.6 434 67.1
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 9.6e-136 488.8 334 73.1
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 1.8e-105 388.3 272 72.8
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 3.7e-103 380.6 279 71.3
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.1e-98 364.8 293 65.9
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.4e-97 362.1 212 85.4
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.8e-81 308.5 238 64.3
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.2e-70 271.2 365 46.6
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 9.9e-56 223.0 217 51.6
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.5e-51 208.4 286 50.3
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 5.1e-44 184.1 224 54.9
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 1.1e-43 183.0 254 43.3
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.6e-42 179.1 199 51.3
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 9.0e-25 120.2 82 70.7
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.2e-24 119.8 107 62.6
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-24 118.2 260 33.1
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 3.5e-21 108.2 56 89.3
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.8e-18 97.8 55 89.1
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 5.3e-17 94.4 393 23.2
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 6.1e-13 80.9 71 62.0
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 9.1e-09 67.0 119 41.2
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 2.0e-08 65.9 54 61.1


User provided reference genes

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