Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.9e-133 477.2 230 100.0
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 3.3e-95 352.1 224 75.4
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 3.5e-92 342.0 229 69.9
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 6.5e-91 337.8 229 71.2
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.1e-90 337.0 229 70.7
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.1e-90 337.0 229 71.2
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.9e-90 336.3 230 68.3
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.4e-90 334.0 230 69.6
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.2e-89 333.6 229 69.9
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 2.1e-89 332.8 229 68.6
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 4.7e-89 331.6 229 70.3
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.0e-88 330.5 229 69.0
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.0e-88 330.5 228 68.0
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 2.3e-88 329.3 229 69.0
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 2.3e-88 329.3 229 68.6
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 3.9e-88 328.6 229 68.1
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 5.2e-88 328.2 222 68.0
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 1.5e-87 326.6 229 69.9
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 4.4e-87 325.1 225 67.6
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 4.8e-86 321.6 229 68.6
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 9.1e-85 317.4 229 65.9
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.2e-84 317.0 227 67.4
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.6e-84 316.6 229 65.5
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.7e-83 313.2 227 65.2
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 2.9e-83 312.4 227 65.6
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.5e-82 310.1 229 64.2
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.5e-82 309.3 229 65.5
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 3.2e-82 308.9 221 67.9
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 7.2e-82 307.8 221 67.9
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.6e-81 306.6 227 65.2
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 3.6e-81 305.4 228 66.2
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 6.1e-81 304.7 225 62.7
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 6.1e-81 304.7 227 65.6
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 8.0e-81 304.3 221 68.3
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.8e-80 303.1 227 65.6
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.3e-80 302.8 230 63.0
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.7e-80 301.2 230 62.6
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 6.7e-80 301.2 229 63.8
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 6.7e-80 301.2 230 63.0
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 2.0e-79 299.7 228 64.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 2.6e-79 299.3 227 63.9
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.3e-78 297.0 225 64.9
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.7e-78 296.6 217 65.9
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.7e-78 296.6 230 65.2
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 2.2e-78 296.2 229 63.3
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 4.8e-78 295.0 232 65.5
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.4e-77 293.5 230 64.3
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 1.4e-77 293.5 231 64.1
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.1e-77 292.4 231 64.1
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 4.1e-77 292.0 229 63.8
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 7.0e-77 291.2 229 62.0
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-76 290.0 230 63.9
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-76 290.0 230 64.3
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 5.9e-76 288.1 231 63.6
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 5.9e-76 288.1 227 62.6
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.8e-75 285.4 231 62.3
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.5e-75 284.6 226 60.6
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 8.5e-75 284.3 227 61.2
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.5e-74 283.5 230 61.3
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.5e-74 283.5 226 61.5
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 2.5e-74 282.7 229 60.3
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 7.2e-74 281.2 226 61.1
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.2e-73 280.4 225 61.3
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.6e-73 280.0 233 58.4
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.1e-73 278.1 184 70.1
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.8e-72 276.6 226 59.7
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 5.2e-72 275.0 229 55.9
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 7.5e-71 271.2 230 59.6
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.8e-70 269.2 228 58.8
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 8.3e-70 267.7 222 58.6
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.6e-68 263.5 228 56.1
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 3.5e-68 262.3 227 58.1
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 5.9e-68 261.5 227 56.4
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.7e-67 260.0 227 55.5
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.7e-67 260.0 208 63.0
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.3e-67 259.6 227 55.5
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 2.3e-67 259.6 228 54.4
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 2.3e-67 259.6 226 55.8
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.6e-67 257.7 220 58.2
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.1e-66 257.3 228 53.9
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.5e-66 256.9 228 53.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.5e-66 256.9 227 55.1
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.9e-66 256.5 229 55.5
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.2e-65 253.8 204 59.3
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.6e-65 253.4 204 59.8
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 2.1e-65 253.1 227 53.3
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 2.1e-65 253.1 228 53.1
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 2.1e-65 253.1 228 53.5
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 6.1e-65 251.5 228 53.5
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 8.9e-64 247.7 227 53.7
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.2e-63 247.3 228 52.2
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.0e-63 246.5 225 56.0
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 3.4e-63 245.7 227 52.0
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 6.3e-62 241.5 230 53.0
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.1e-61 240.7 231 53.2
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 3.5e-60 235.7 244 50.0
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 9.5e-58 227.6 229 50.7
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 4.7e-57 225.3 238 49.2
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 2.3e-56 223.0 222 52.3
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 8.9e-56 221.1 235 48.5
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.4e-53 213.0 248 48.0
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.2e-53 212.6 248 46.8
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 7.0e-53 211.5 242 47.9
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 7.8e-52 208.0 222 49.5
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 3.0e-51 206.1 144 68.8
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 3.9e-51 205.7 228 46.1
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 4.3e-50 202.2 227 46.3
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.6e-49 199.1 232 47.4
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 3.4e-47 192.6 238 44.5
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.5e-47 191.4 229 46.3
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.2e-46 189.9 262 40.1
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.9e-45 186.8 232 42.2
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 3.2e-45 186.0 231 44.6
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 5.4e-45 185.3 240 42.1
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.0e-43 179.5 232 43.1
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.9e-43 179.1 231 47.6
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.6e-43 177.9 231 47.2
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.9e-42 176.8 258 38.8
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.9e-42 176.8 210 42.9
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.9e-42 176.8 210 42.9
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.5e-42 176.4 226 46.0
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 9.5e-42 174.5 258 36.0
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 1.2e-41 174.1 228 42.1
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 6.2e-41 171.8 230 43.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.1e-41 171.4 225 40.9
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 5.2e-40 168.7 149 54.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 6.8e-40 168.3 226 41.6
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 8.9e-40 167.9 267 37.5
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 9.9e-39 164.5 267 37.5
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.1e-36 156.8 229 39.3
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 6.0e-36 155.2 215 41.9
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.3e-35 154.1 252 38.9
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.5e-34 150.6 159 44.7
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 4.3e-34 149.1 151 50.3
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.2e-33 147.5 139 51.1
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 4.7e-33 145.6 134 50.0
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 1.4e-32 144.1 245 37.6
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 8.9e-32 141.4 185 41.1
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 9.9e-31 137.9 216 37.5
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 1.7e-30 137.1 146 47.9
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.8e-30 136.0 134 52.2
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.8e-30 136.0 210 35.7
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 8.4e-30 134.8 224 38.4
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.4e-29 133.3 134 50.7
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 2.4e-29 133.3 227 34.8
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 1.2e-28 131.0 129 51.9
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 6.0e-28 128.6 210 35.2
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 6.0e-28 128.6 132 50.0
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.3e-27 127.5 143 44.8
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 3.0e-27 126.3 114 53.5
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 2.5e-26 123.2 105 56.2
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.4e-24 117.5 147 42.9
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 4.0e-24 115.9 147 40.1
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.0e-23 113.6 147 39.5
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.6e-23 111.7 226 30.1
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 7.3e-18 95.1 103 42.7
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.8e-16 90.5 213 34.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 5.3e-16 89.0 150 31.3
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.0e-15 87.0 93 46.2
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.5e-15 85.9 79 48.1
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-12 77.8 167 32.3
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.1e-12 77.0 153 32.7
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.7e-12 76.6 246 27.2
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 4.3e-10 69.3 69 46.4


User provided reference genes

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