Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.4e-75 287.0 155 100.0
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 3.2e-59 232.6 144 87.5
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 5.5e-59 231.9 154 82.5
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 5.5e-59 231.9 150 84.0
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 7.1e-59 231.5 150 84.7
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 3.5e-58 229.2 153 82.4
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 3.5e-58 229.2 150 83.3
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 7.9e-58 228.0 147 85.0
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.8e-57 226.9 150 82.7
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.8e-57 226.9 150 84.7
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 3.9e-57 225.7 150 82.7
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 5.1e-57 225.3 155 79.4
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 6.7e-57 224.9 149 82.6
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.5e-56 223.8 150 82.0
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.9e-56 223.4 150 82.0
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 1.9e-56 223.4 155 79.4
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 1.9e-56 223.4 150 82.7
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 2.5e-56 223.0 151 83.4
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 3.3e-56 222.6 150 82.0
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 4.3e-56 222.2 150 82.0
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 4.3e-56 222.2 148 83.1
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 4.3e-56 222.2 148 83.1
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 5.7e-56 221.9 150 80.0
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 5.7e-56 221.9 150 80.7
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 7.4e-56 221.5 150 81.3
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 7.4e-56 221.5 150 80.0
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 7.4e-56 221.5 150 80.7
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 9.6e-56 221.1 150 82.0
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 1.3e-55 220.7 150 79.3
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.3e-55 220.7 154 82.5
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 1.3e-55 220.7 145 83.4
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.3e-55 220.7 150 81.3
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 2.1e-55 219.9 150 82.0
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.1e-55 219.9 150 81.3
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.8e-55 219.5 150 80.0
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.1e-54 216.1 145 80.7
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 3.1e-54 216.1 150 80.7
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 5.3e-54 215.3 151 79.5
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.2e-53 214.2 142 80.3
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 3.4e-53 212.6 163 74.2
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 3.4e-53 212.6 169 73.4
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.5e-53 212.2 150 79.3
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 5.9e-53 211.8 150 78.0
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 1.3e-52 210.7 150 78.0
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 1.3e-52 210.7 150 78.7
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.7e-52 210.3 150 70.7
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 2.9e-52 209.5 153 74.5
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 6.5e-52 208.4 154 77.9
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 8.5e-52 208.0 149 77.2
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 1.1e-51 207.6 145 80.0
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 5.5e-51 205.3 149 77.9
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.2e-51 204.9 141 79.4
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 7.2e-51 204.9 150 78.7
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 1.2e-50 204.1 150 75.3
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.6e-50 203.8 150 76.7
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 2.7e-50 203.0 153 75.8
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 2.7e-50 203.0 134 85.1
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 7.9e-50 201.4 150 76.0
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 7.9e-50 201.4 150 75.3
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 6.7e-49 198.4 154 76.0
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 1.1e-48 197.6 149 75.2
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 1.1e-48 197.6 149 75.2
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 1.1e-48 197.6 131 82.4
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 1.5e-48 197.2 152 73.7
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 5.7e-48 195.3 149 74.5
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 7.4e-48 194.9 150 75.3
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.3e-47 194.1 188 63.3
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 1.6e-47 193.7 150 75.3
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 1.6e-47 193.7 150 74.0
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 2.8e-47 193.0 150 73.3
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 3.7e-47 192.6 150 73.3
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 3.7e-47 192.6 165 69.7
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 6.3e-47 191.8 133 80.5
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 2.4e-46 189.9 154 72.7
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 9.1e-46 188.0 157 63.7
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 1.2e-45 187.6 142 75.4
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.2e-45 187.6 150 72.0
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.0e-45 186.8 173 58.4
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 3.4e-45 186.0 151 70.9
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.3e-44 184.1 123 84.6
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 2.2e-44 183.3 140 75.0
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.9e-43 180.3 153 67.3
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 1.9e-43 180.3 201 49.8
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 2.5e-43 179.9 142 73.9
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.2e-43 179.1 126 79.4
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 5.5e-43 178.7 123 80.5
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-42 177.6 117 84.6
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.0e-41 174.5 150 68.0
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 5.7e-40 168.7 128 76.6
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 7.4e-40 168.3 154 68.8
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 2.8e-39 166.4 141 61.0
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 1.1e-38 164.5 129 72.9
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 3.1e-38 162.9 150 67.3
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 9.1e-38 161.4 156 62.8
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 2.6e-37 159.8 90 85.6
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 3.4e-37 159.5 114 78.1
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 3.4e-37 159.5 124 72.6
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 1.9e-35 153.7 90 81.1
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.2e-34 151.0 114 76.3
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.2e-34 151.0 148 59.5
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 7.9e-34 148.3 149 54.4
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 3.9e-33 146.0 90 77.8
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 8.8e-33 144.8 127 66.1
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.5e-32 144.1 150 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 2.0e-32 143.7 150 60.0
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.2e-31 140.2 92 72.8
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 8.2e-31 138.3 133 64.7
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 9.1e-30 134.8 121 73.6
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.6e-29 134.0 144 59.7
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 4.5e-29 132.5 118 68.6
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 7.7e-29 131.7 135 60.7
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 3.8e-28 129.4 92 69.6
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.0e-28 129.0 131 54.2
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-27 127.9 93 67.7
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.1e-27 127.9 90 66.7
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 4.2e-27 125.9 90 66.7
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 5.5e-27 125.6 134 54.5
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.7e-26 122.5 89 64.0
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 8.0e-26 121.7 128 50.8
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.8e-25 120.6 132 56.1
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 1.8e-25 120.6 94 68.1
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 2.3e-25 120.2 91 68.1
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 2.0e-24 117.1 119 65.5
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 4.4e-24 115.9 95 66.3
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 2.2e-23 113.6 123 59.3
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 2.2e-23 113.6 143 53.8
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-22 111.3 116 58.6
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 7.0e-22 108.6 130 56.2
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 1.0e-20 104.8 116 57.8
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 6.5e-20 102.1 107 63.6
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 2.7e-18 96.7 90 53.3
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.0e-18 95.1 135 42.2
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.0e-17 94.7 79 75.9
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.8e-17 94.0 118 47.5
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 1.5e-16 90.9 113 47.8
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 5.7e-16 89.0 113 44.2
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 7.5e-16 88.6 45 86.7
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.8e-15 86.7 138 37.7
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 3.7e-15 86.3 45 84.4
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.3e-15 85.5 178 40.4
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.1e-14 84.7 45 84.4
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 1.1e-14 84.7 118 43.2
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.4e-14 84.3 87 51.7
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.8e-14 84.0 86 51.2
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.1e-14 82.8 63 58.7
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.0e-14 82.0 152 44.1
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.5e-13 79.7 136 39.7
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 5.9e-13 79.0 53 64.2
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.0e-12 75.9 47 74.5
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.0e-12 75.9 115 40.0
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.5e-11 74.3 91 47.3
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.5e-11 73.6 45 73.3
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 9.5e-11 71.6 60 55.0
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.5e-11 71.6 60 55.0
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 8.0e-10 68.6 78 51.3
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.0e-10 68.6 55 61.8
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 1.8e-09 67.4 53 60.4
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 4.0e-09 66.2 33 81.8
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 4.0e-09 66.2 33 81.8
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 2.0e-08 63.9 32 81.2
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 3.4e-08 63.2 135 43.0
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.9e-07 59.3 60 50.0
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 1.1e-06 58.2 38 63.2


User provided reference genes

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