Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.4e-29 131.0 65 100.0
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-21 105.5 52 100.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.3e-20 102.4 52 96.2
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.3e-20 102.4 52 96.2
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.3e-20 102.4 52 96.2
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.3e-20 102.4 52 96.2
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.2e-20 101.7 52 96.2
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 4.9e-20 100.5 52 92.3
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 6.5e-20 100.1 52 94.2
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 6.5e-20 100.1 52 94.2
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.1e-19 99.4 52 92.3
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.1e-19 99.4 52 92.3
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.5e-19 98.2 50 96.0
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 2.5e-19 98.2 50 96.0
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.5e-19 98.2 50 96.0
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.5e-19 98.2 52 90.4
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.5e-19 98.2 52 90.4
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 3.2e-19 97.8 48 100.0
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 5.5e-19 97.1 55 90.9
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 5.5e-19 97.1 55 90.9
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 5.5e-19 97.1 53 92.5
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 5.5e-19 97.1 52 90.4
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 7.1e-19 96.7 50 94.0
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 7.1e-19 96.7 50 94.0
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 7.1e-19 96.7 56 89.3
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 9.3e-19 96.3 47 100.0
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.2e-18 95.9 50 94.0
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.6e-18 95.5 59 84.7
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.6e-18 95.5 59 84.7
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.6e-18 95.5 59 84.7
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 2.7e-18 94.7 61 82.0
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 3.5e-18 94.4 47 97.9
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.5e-18 94.4 50 90.0
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.5e-18 94.4 62 80.6
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 4.6e-18 94.0 54 88.9
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 4.6e-18 94.0 57 86.0
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.6e-18 94.0 59 83.1
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 6.0e-18 93.6 52 90.4
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 6.0e-18 93.6 49 91.8
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 6.0e-18 93.6 50 88.0
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 6.0e-18 93.6 47 95.7
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 6.0e-18 93.6 52 90.4
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 6.0e-18 93.6 57 86.0
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 6.0e-18 93.6 57 86.0
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 6.0e-18 93.6 57 86.0
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 7.9e-18 93.2 56 85.7
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 7.9e-18 93.2 47 95.7
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.9e-18 93.2 47 95.7
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.9e-18 93.2 47 95.7
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 7.9e-18 93.2 47 95.7
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 7.9e-18 93.2 58 84.5
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 7.9e-18 93.2 47 95.7
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 1.0e-17 92.8 59 83.1
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.0e-17 92.8 59 83.1
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.3e-17 92.4 70 72.9
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.3e-17 92.4 50 90.0
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.8e-17 92.0 58 82.8
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.8e-17 92.0 61 80.3
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 1.8e-17 92.0 46 97.8
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 1.8e-17 92.0 66 74.2
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.8e-17 92.0 66 74.2
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 2.3e-17 91.7 45 100.0
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.3e-17 91.7 62 79.0
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.3e-17 91.7 62 79.0
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.3e-17 91.7 62 79.0
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.3e-17 91.7 62 79.0
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.3e-17 91.7 67 73.1
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 2.3e-17 91.7 69 72.5
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 3.0e-17 91.3 46 95.7
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 3.0e-17 91.3 46 95.7
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 3.0e-17 91.3 64 76.6
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 3.0e-17 91.3 58 82.8
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.0e-17 91.3 63 77.8
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 3.0e-17 91.3 62 79.0
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 3.9e-17 90.9 46 95.7
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 3.9e-17 90.9 46 95.7
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 5.1e-17 90.5 59 78.0
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 5.1e-17 90.5 62 77.4
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 5.1e-17 90.5 62 77.4
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 5.1e-17 90.5 65 75.4
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 5.1e-17 90.5 59 81.4
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 5.1e-17 90.5 62 79.0
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 6.7e-17 90.1 63 76.2
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 6.7e-17 90.1 63 76.2
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 6.7e-17 90.1 70 70.0
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 6.7e-17 90.1 73 68.5
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 8.7e-17 89.7 45 97.8
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 8.7e-17 89.7 45 97.8
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 8.7e-17 89.7 68 72.1
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 8.7e-17 89.7 62 77.4
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 8.7e-17 89.7 62 77.4
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 8.7e-17 89.7 45 97.8
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 8.7e-17 89.7 45 97.8
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 8.7e-17 89.7 50 88.0
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.1e-16 89.4 72 68.1
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-16 89.4 66 72.7
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-16 89.4 66 72.7
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.1e-16 89.4 65 73.8
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-16 89.4 73 67.1
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.1e-16 89.4 61 78.7
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.5e-16 89.0 45 95.6
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.5e-16 89.0 45 95.6
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.5e-16 89.0 45 95.6
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 1.5e-16 89.0 45 95.6
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.5e-16 89.0 45 95.6
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.9e-16 88.6 45 95.6
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.9e-16 88.6 45 95.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.9e-16 88.6 45 95.6
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.9e-16 88.6 45 95.6
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.9e-16 88.6 48 87.5
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.9e-16 88.6 62 75.8
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.5e-16 88.2 45 95.6
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 2.5e-16 88.2 45 95.6
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.5e-16 88.2 68 70.6
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 3.3e-16 87.8 56 82.1
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.3e-16 87.8 52 84.6
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 4.3e-16 87.4 44 97.7
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 4.3e-16 87.4 45 95.6
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 4.3e-16 87.4 44 97.7
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 4.3e-16 87.4 44 97.7
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 4.3e-16 87.4 46 91.3
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 4.3e-16 87.4 44 97.7
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 4.3e-16 87.4 52 82.7
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 9.6e-16 86.3 46 89.1
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 9.6e-16 86.3 44 95.5
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.3e-15 85.9 44 95.5
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.6e-15 85.5 52 82.7
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.1e-15 85.1 45 91.1
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 6.3e-15 83.6 51 78.4
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 8.2e-15 83.2 46 87.0
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.8e-14 82.0 52 78.8
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 4.1e-14 80.9 70 62.9
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.2e-13 79.3 40 95.0
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.9e-13 77.0 38 94.7
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 6.5e-12 73.6 36 94.4
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.6e-10 68.9 34 94.1
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 4.1e-06 54.3 93 39.8


User provided reference genes

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