Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 5.7e-92 340.9 171 100.0
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 8.9e-77 290.4 152 91.4
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.3e-75 286.6 154 89.6
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 3.7e-75 285.0 149 91.9
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.7e-75 285.0 149 91.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.7e-75 285.0 149 91.9
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.7e-75 285.0 149 91.9
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 3.7e-75 285.0 149 91.9
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.7e-75 285.0 157 88.5
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 4.9e-75 284.6 148 92.6
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 6.3e-75 284.3 149 91.9
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 8.3e-75 283.9 149 91.9
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 8.3e-75 283.9 149 90.6
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 8.3e-75 283.9 151 90.7
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.1e-74 283.5 149 92.6
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.4e-74 283.1 149 91.3
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.4e-74 283.1 149 91.3
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.8e-74 282.7 148 92.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 3.2e-74 282.0 149 90.6
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.2e-74 282.0 148 92.6
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 4.1e-74 281.6 149 91.3
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 4.1e-74 281.6 149 91.3
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 7.0e-74 280.8 149 91.3
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 9.2e-74 280.4 149 89.9
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 9.2e-74 280.4 149 89.9
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 9.2e-74 280.4 149 89.9
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.2e-73 280.0 148 91.2
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.6e-73 279.6 149 89.9
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.6e-73 279.6 149 90.6
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 2.0e-73 279.3 149 90.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 2.7e-73 278.9 149 90.6
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.7e-73 278.9 149 90.6
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.7e-73 278.9 149 89.9
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.7e-73 278.9 149 90.6
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.5e-73 278.5 149 89.3
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.5e-73 278.5 149 89.3
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.5e-73 278.1 148 91.2
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 5.9e-73 277.7 150 87.3
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.9e-73 277.7 148 90.5
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 7.8e-73 277.3 149 91.3
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 7.8e-73 277.3 149 89.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 7.8e-73 277.3 149 89.3
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 7.8e-73 277.3 149 90.6
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.3e-72 276.6 149 88.6
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.3e-72 275.8 149 87.9
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 3.9e-72 275.0 145 92.4
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 6.6e-72 274.2 149 87.2
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 6.6e-72 274.2 150 87.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 6.6e-72 274.2 149 87.2
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.1e-71 273.5 149 87.9
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.1e-71 273.5 149 87.2
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.1e-71 273.5 149 89.3
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-71 273.1 149 94.0
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.9e-71 272.7 149 89.3
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.9e-71 272.7 149 87.9
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.9e-71 272.7 149 89.3
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.9e-71 272.7 166 81.9
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.5e-71 272.3 149 88.6
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-71 272.3 166 81.9
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-71 272.3 166 81.9
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 3.3e-71 271.9 149 86.6
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 7.3e-71 270.8 149 87.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.6e-70 269.6 147 87.8
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.1e-70 269.2 149 87.2
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 2.1e-70 269.2 162 81.5
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.6e-70 268.5 143 89.5
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 3.6e-70 268.5 148 86.5
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.0e-69 266.9 149 84.6
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.0e-69 266.9 149 85.2
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.0e-69 266.9 166 80.1
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.8e-69 266.2 149 84.6
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.3e-69 265.8 149 86.6
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.3e-69 265.8 149 83.9
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.0e-69 265.0 149 83.9
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 4.0e-69 265.0 149 87.2
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 5.2e-69 264.6 149 83.9
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 6.8e-69 264.2 149 83.9
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 6.8e-69 264.2 149 83.2
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 8.9e-69 263.8 149 83.2
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 1.2e-68 263.5 147 88.4
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.4e-68 261.5 149 84.6
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.8e-68 261.2 172 76.2
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 5.8e-68 261.2 149 84.6
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 7.5e-68 260.8 149 83.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 9.8e-68 260.4 149 83.2
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.7e-67 259.6 148 84.5
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 2.2e-67 259.2 149 81.2
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.7e-67 258.5 149 83.9
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 8.3e-67 257.3 149 82.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.1e-66 256.9 149 82.6
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-66 256.5 149 83.2
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.4e-66 256.5 149 83.2
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.9e-66 256.1 149 83.2
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 3.2e-66 255.4 149 80.5
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 9.2e-66 253.8 194 69.1
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-65 253.4 149 81.2
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.7e-65 252.3 149 81.9
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.7e-65 252.3 149 80.5
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 3.5e-65 251.9 203 65.0
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.0e-64 250.4 153 79.1
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.3e-64 250.0 177 70.6
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.3e-64 250.0 148 83.8
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.7e-64 249.6 149 77.9
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.3e-64 249.2 138 87.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 6.6e-64 247.7 149 81.9
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 6.6e-64 247.7 149 79.9
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.5e-63 246.5 149 81.2
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.9e-63 246.1 138 87.0
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 3.3e-63 245.4 149 81.2
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 4.3e-63 245.0 135 86.7
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.2e-62 243.4 149 74.5
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.6e-62 241.9 153 77.1
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.8e-61 239.6 150 78.7
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.3e-61 239.2 160 77.5
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 5.2e-61 238.0 133 86.5
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 5.2e-61 238.0 124 89.5
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 2.6e-60 235.7 126 87.3
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 9.8e-60 233.8 150 76.0
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.7e-59 233.0 149 77.9
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.9e-59 231.5 123 87.8
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.2e-57 226.9 150 74.7
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 3.3e-55 218.8 139 80.6
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.6e-54 215.3 150 76.7
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 8.9e-53 210.7 179 59.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 5.8e-52 208.0 154 72.1
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.3e-51 206.8 134 76.9
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.7e-51 206.5 149 72.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 8.3e-51 204.1 138 72.5
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.4e-50 202.6 141 73.8
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.1e-49 199.5 104 96.2
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-48 196.8 149 69.8
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.7e-48 196.4 150 68.7
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.9e-48 195.3 114 84.2
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 6.6e-48 194.5 104 92.3
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 8.6e-48 194.1 104 91.3
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-47 193.7 104 90.4
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-47 193.7 104 90.4
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.5e-47 192.6 104 89.4
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 4.3e-47 191.8 106 88.7
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.7e-46 188.3 104 91.3
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 6.2e-46 188.0 111 87.4
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.5e-44 183.3 117 74.4
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 3.4e-44 182.2 90 93.3
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.7e-43 179.9 104 86.5
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 6.0e-41 171.4 90 92.2
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 7.6e-36 154.5 87 90.8
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 4.6e-33 145.2 118 62.7
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.6e-32 141.4 77 93.5
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.5e-28 128.6 74 89.2
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 8.4e-27 124.4 81 72.8
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.4e-27 124.4 85 70.6
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 3.2e-26 122.5 107 59.8
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.1e-24 115.2 81 69.1
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.7e-24 114.4 75 73.3
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 8.1e-22 107.8 78 65.4
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.1e-22 107.8 72 72.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.5e-19 98.2 64 75.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 5.5e-18 95.1 145 39.3
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-17 93.6 67 70.1
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.0e-16 90.9 118 41.5
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.0e-16 89.4 52 84.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.0e-16 89.4 52 84.6
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-15 86.3 111 51.4
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.8e-14 82.8 44 81.8
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 2.4e-13 79.7 161 35.4
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.2e-10 68.9 38 76.3


User provided reference genes

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