Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.5e-90 336.3 178 100.0
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-60 236.1 125 99.2
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 3.3e-50 202.2 142 73.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.6e-49 199.9 184 60.3
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 9.9e-47 190.7 196 58.7
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.7e-46 189.9 175 61.1
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 1.7e-46 189.9 190 55.8
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.1e-45 187.2 190 56.3
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.4e-45 186.8 198 54.0
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 3.2e-45 185.7 188 55.9
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 5.5e-45 184.9 197 58.9
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 5.5e-45 184.9 175 61.7
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 7.1e-45 184.5 187 55.1
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 9.3e-45 184.1 188 53.7
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.2e-44 183.7 188 54.3
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.2e-44 183.7 190 54.7
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.6e-44 183.3 188 53.2
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.6e-44 183.3 181 57.5
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.5e-44 182.2 193 53.4
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 3.5e-44 182.2 189 52.9
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 3.5e-44 182.2 187 53.5
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 3.5e-44 182.2 197 56.9
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.6e-44 181.8 188 52.7
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 6.0e-44 181.4 181 55.2
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 6.0e-44 181.4 210 51.4
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 7.9e-44 181.0 187 52.9
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.8e-43 179.9 189 53.4
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.8e-43 179.9 189 53.4
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.8e-43 179.9 189 53.4
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.8e-43 179.9 189 53.4
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.8e-43 179.9 198 54.5
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.3e-43 179.5 190 54.2
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 5.1e-43 178.3 187 51.9
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 8.7e-43 177.6 195 50.8
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 8.7e-43 177.6 189 50.8
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.5e-42 176.8 189 52.4
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.9e-42 176.4 191 52.9
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.9e-42 176.4 195 53.3
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.5e-42 176.0 189 51.9
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 1.3e-41 173.7 196 49.0
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 2.1e-41 172.9 189 51.3
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 3.7e-41 172.2 179 53.1
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.7e-41 172.2 184 56.5
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.7e-41 172.2 188 50.5
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 4.8e-41 171.8 189 52.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.1e-40 170.6 190 50.0
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 1.4e-40 170.2 198 51.0
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 1.4e-40 170.2 198 51.0
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.8e-40 169.9 218 45.4
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.8e-40 169.9 180 53.9
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 3.1e-40 169.1 204 48.5
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.1e-40 169.1 190 53.2
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.5e-39 166.8 204 48.0
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 2.0e-39 166.4 204 48.0
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 2.6e-39 166.0 204 47.5
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.6e-39 166.0 195 53.3
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 3.4e-39 165.6 193 49.7
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 4.5e-39 165.2 194 47.9
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.3e-38 163.7 193 49.2
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.7e-38 163.3 207 46.4
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 2.2e-38 162.9 251 42.6
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 2.9e-38 162.5 206 46.1
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.9e-38 162.5 206 46.1
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 2.9e-38 162.5 198 47.5
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 2.9e-38 162.5 194 50.0
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 2.9e-38 162.5 233 43.8
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 4.9e-38 161.8 206 46.1
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 4.9e-38 161.8 206 46.1
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 4.9e-38 161.8 206 46.1
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 6.5e-38 161.4 115 74.8
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 8.4e-38 161.0 182 53.8
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.1e-37 160.6 199 48.2
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 9.3e-37 157.5 199 45.2
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.1e-36 156.4 179 54.7
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 2.1e-36 156.4 195 47.7
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 3.5e-36 155.6 201 46.3
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 4.6e-36 155.2 197 48.2
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.0e-35 154.1 201 47.3
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.3e-35 152.9 197 51.3
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.3e-35 152.9 191 51.8
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 3.0e-35 152.5 185 53.0
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 5.1e-35 151.8 197 51.3
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 8.7e-35 151.0 201 45.8
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 2.5e-34 149.4 190 48.9
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 4.3e-34 148.7 184 53.8
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.7e-34 147.5 189 49.7
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.7e-34 147.5 189 49.7
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.3e-33 147.1 191 50.3
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.3e-33 147.1 204 49.0
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.2e-33 146.4 187 49.7
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 3.7e-33 145.6 191 48.7
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 4.8e-33 145.2 113 68.1
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 6.3e-33 144.8 106 68.9
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 8.2e-33 144.4 178 53.9
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 8.2e-33 144.4 188 50.0
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.1e-32 144.1 185 50.3
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.1e-32 144.1 189 49.2
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.8e-32 143.3 198 48.5
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 3.1e-32 142.5 190 47.9
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 3.1e-32 142.5 205 46.3
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 6.9e-32 141.4 189 47.6
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 6.9e-32 141.4 193 47.7
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.2e-31 140.6 148 53.4
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.6e-31 139.4 188 48.9
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.5e-31 138.7 188 48.9
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 1.3e-30 137.1 108 63.0
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.7e-30 136.7 191 48.7
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.7e-30 136.7 190 42.1
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.7e-30 136.7 198 43.4
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.9e-30 136.0 100 69.0
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 5.0e-30 135.2 197 45.7
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.9e-29 133.3 199 43.2
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 2.5e-29 132.9 181 44.2
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.6e-28 130.2 167 46.7
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 2.1e-28 129.8 230 38.3
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 6.1e-28 128.3 196 44.4
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.0e-27 127.5 133 51.1
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.0e-27 127.5 133 51.1
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 2.3e-27 126.3 182 46.7
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 6.7e-27 124.8 187 44.4
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.9e-26 123.2 182 45.1
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 3.3e-26 122.5 181 47.0
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 7.4e-26 121.3 68 83.8
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 9.7e-26 120.9 216 37.0
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 9.7e-26 120.9 216 37.0
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 4.8e-25 118.6 187 43.9
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 8.2e-25 117.9 192 42.7
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 2.4e-24 116.3 198 38.4
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.5e-23 113.6 82 69.5
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.5e-23 112.1 69 76.8
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 5.9e-23 111.7 197 38.1
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 8.5e-22 107.8 188 42.0
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.2e-20 104.0 107 53.3
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.2e-17 93.2 57 77.2
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.1e-16 90.9 120 46.7
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.7e-12 76.3 52 69.2
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 9.7e-10 67.8 56 53.6
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.2e-07 60.8 148 32.4
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.6e-07 60.5 123 37.4
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.6e-07 60.5 123 37.4
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 2.0e-07 60.1 134 32.1


User provided reference genes

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