Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.7e-225 783.5 396 100.0
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 8.9e-197 690.3 389 90.0
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 9.0e-173 610.5 399 78.4
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.9e-170 602.8 393 76.8
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 5.4e-170 601.3 393 76.6
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 9.3e-170 600.5 393 74.6
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 2.1e-169 599.4 393 74.8
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 7.8e-169 597.4 393 74.3
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.3e-168 596.7 393 76.3
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 4.3e-167 591.7 394 74.4
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.6e-166 588.6 394 75.4
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 6.2e-166 587.8 394 76.4
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.4e-165 586.6 393 74.0
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.8e-165 586.3 393 73.8
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 3.1e-165 585.5 394 75.4
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 4.0e-165 585.1 393 74.6
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 5.3e-165 584.7 394 75.4
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.2e-164 583.6 394 72.8
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-164 583.6 394 75.1
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.2e-164 583.6 394 75.1
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.0e-164 582.8 393 73.5
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 2.6e-164 582.4 394 75.4
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 3.4e-164 582.0 394 74.9
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.4e-164 582.0 394 75.4
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 3.4e-164 582.0 393 73.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 7.6e-164 580.9 393 73.5
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.3e-163 580.1 399 74.4
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 1.3e-163 580.1 392 75.0
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.7e-163 579.7 393 74.6
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 2.2e-163 579.3 394 74.1
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 2.2e-163 579.3 393 73.8
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 4.9e-163 578.2 393 73.5
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.1e-162 577.0 394 75.1
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.1e-162 577.0 395 74.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.9e-162 576.2 396 74.7
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 7.1e-162 574.3 395 73.9
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.6e-161 573.2 393 73.3
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.5e-161 572.0 393 72.8
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 4.6e-161 571.6 393 73.5
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 4.6e-161 571.6 396 73.2
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 6.0e-161 571.2 393 73.8
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 6.0e-161 571.2 394 73.6
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 1.0e-160 570.5 396 73.7
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.3e-160 570.1 393 73.8
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 5.1e-160 568.2 393 72.8
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.5e-159 566.6 393 72.3
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.9e-159 566.2 400 71.0
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 2.5e-159 565.8 393 71.8
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 2.5e-159 565.8 395 71.4
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 7.4e-159 564.3 395 71.1
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.6e-158 563.1 397 73.0
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 2.1e-158 562.8 395 73.2
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.7e-158 562.0 393 71.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 4.8e-158 561.6 395 72.2
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 8.1e-158 560.8 393 72.8
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.4e-157 559.3 425 67.1
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 3.1e-157 558.9 394 71.1
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 5.3e-157 558.1 394 73.6
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 2.2e-155 552.7 394 71.8
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.4e-154 550.1 394 70.8
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.9e-154 549.7 393 70.0
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 3.2e-154 548.9 393 69.0
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 7.1e-154 547.7 344 76.7
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 9.3e-154 547.4 355 75.8
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.2e-153 547.0 393 70.0
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 2.7e-153 545.8 402 71.9
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 4.6e-153 545.0 393 68.7
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.0e-153 544.7 393 69.0
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 7.9e-153 544.3 395 69.1
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 7.9e-153 544.3 374 72.7
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 3.9e-152 542.0 396 69.2
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 8.7e-152 540.8 394 69.0
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.8e-150 535.8 395 69.4
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 3.7e-150 535.4 393 68.2
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 6.2e-150 534.6 394 69.5
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.4e-149 532.7 396 68.7
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 6.9e-149 531.2 428 64.3
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 4.5e-148 528.5 394 68.5
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.0e-147 527.3 393 67.2
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 2.5e-146 522.7 394 68.0
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 9.3e-146 520.8 447 62.6
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.6e-145 520.0 394 68.0
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.1e-145 519.6 393 67.4
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.9e-143 513.1 393 65.4
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.3e-142 510.4 396 67.9
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.6e-142 510.0 400 65.8
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.8e-142 509.2 394 67.3
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.6e-140 502.7 394 64.7
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 3.4e-140 502.3 393 63.4
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 7.7e-140 501.1 389 66.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 4.2e-138 495.4 420 61.2
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 4.2e-138 495.4 368 68.2
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 9.4e-138 494.2 344 69.8
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 2.1e-137 493.0 394 64.5
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 4.6e-137 491.9 404 63.1
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 6.7e-136 488.0 389 64.0
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 8.2e-134 481.1 396 64.4
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 5.3e-133 478.4 395 62.8
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.2e-132 477.2 395 63.0
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 4.5e-132 475.3 391 63.4
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.0e-131 474.2 395 61.5
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 4.2e-130 468.8 394 63.5
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 9.4e-130 467.6 395 61.5
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.2e-129 467.2 395 65.8
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.4e-128 463.8 334 68.3
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 6.7e-128 461.5 354 65.0
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.8e-128 461.1 394 62.4
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.3e-126 457.2 345 67.2
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 4.5e-124 448.7 382 62.8
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 4.7e-121 438.7 349 66.2
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 7.7e-116 421.4 299 69.2
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 6.7e-112 408.3 353 61.8
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 9.7e-111 404.4 396 59.1
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 1.2e-108 397.5 252 80.2
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 2.9e-107 392.9 336 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 9.8e-103 377.9 335 58.5
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 5.0e-99 365.5 396 51.3
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 5.0e-99 365.5 334 57.5
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 6.3e-94 348.6 315 57.8
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 5.0e-91 339.0 221 74.7
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.1e-89 333.6 399 52.4
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 2.2e-78 297.0 210 70.5
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.2e-77 293.1 188 75.0
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 7.3e-74 282.0 187 75.9
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.5e-71 274.2 337 46.6
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 4.6e-68 262.7 398 42.2
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.5e-58 231.1 191 62.3
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.8e-56 224.2 146 73.3
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 4.9e-54 216.1 393 37.2
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 6.6e-51 205.7 118 83.1
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 4.3e-50 203.0 219 51.1
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.4e-45 188.0 170 57.6
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.0e-39 167.5 494 28.7
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.6e-36 157.9 120 67.5
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 3.1e-32 143.7 125 58.4
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 6.9e-32 142.5 125 58.4
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 6.7e-27 125.9 95 66.3
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 1.8e-24 117.9 379 28.0
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.2e-20 105.1 89 59.6
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.0e-19 102.1 59 79.7
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.1e-16 90.5 123 44.7
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 5.3e-16 89.7 161 37.3
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.3e-14 85.1 114 48.2
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.7e-14 84.7 94 50.0
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 6.1e-12 76.3 106 44.3
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 1.5e-10 71.6 44 77.3
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 2.8e-09 67.4 86 46.5
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 7.0e-08 62.8 47 68.1


User provided reference genes

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