Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 2774.6 1398 100.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2210.6 1473 76.6
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2196.8 1502 75.8
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2152.9 1573 70.8
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2131.3 1468 74.0
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2117.4 1468 73.7
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2109.7 1474 72.8
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2105.1 1481 72.1
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2103.9 1467 73.1
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2100.1 1470 72.2
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2080.8 1469 72.6
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2072.4 1471 71.5
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2065.8 1472 71.3
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2061.6 1467 71.2
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2061.2 1467 71.4
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2060.4 1467 71.4
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2058.1 1578 68.6
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2053.1 1467 71.0
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2051.9 1472 71.1
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2047.3 1472 71.1
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 2045.8 1449 71.9
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2045.4 1471 71.2
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2039.6 1478 70.6
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2038.5 1566 67.8
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2037.7 1438 72.7
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2030.0 1488 70.0
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2030.0 1536 69.1
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2022.3 1524 69.0
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2014.6 1467 70.7
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2014.6 1525 68.1
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 1994.5 1467 69.2
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 1984.1 1467 68.5
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1981.5 1466 68.6
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 1979.9 1466 68.8
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1974.5 1442 69.4
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1971.1 1476 68.4
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 1967.6 1469 68.1
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 1964.9 1471 67.2
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 1961.8 1481 67.7
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 1959.1 1467 68.0
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 1954.9 1471 67.4
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1951.8 1470 67.9
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 1946.4 1466 68.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 1944.9 1471 67.0
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 1944.5 1465 68.7
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1942.9 1485 67.3
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 1941.0 1470 66.8
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 1940.2 1531 67.0
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 1931.0 1345 73.6
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 1930.6 1470 67.7
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 1927.9 1477 67.5
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1908.6 1470 66.2
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 1897.1 1466 67.2
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1893.2 1468 66.0
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 1879.0 1477 65.3
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 1876.3 1468 65.9
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 1873.6 1467 65.7
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 1859.7 1445 66.9
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1854.3 1585 60.9
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1852.0 1478 64.3
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 1850.9 1472 64.3
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1842.8 1504 64.4
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1838.9 1468 64.5
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 1832.8 1472 64.8
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 1805.0 1339 70.1
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1791.5 1477 63.0
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 1783.8 1473 62.9
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 1782.3 1493 62.5
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 1780.0 1472 62.6
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 1777.7 1475 62.5
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1775.8 1485 62.2
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1766.9 1489 62.3
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 1766.1 1476 62.5
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1754.2 1485 61.8
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 1751.9 1447 62.7
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1750.7 1397 66.1
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1736.1 1479 61.4
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1722.6 1506 60.4
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1719.9 1485 60.9
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1718.4 1499 60.4
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1716.4 1476 60.8
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 1716.0 1444 61.6
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1671.8 1472 60.4
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1654.8 1275 66.5
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1654.0 1209 70.2
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1569.7 1476 57.6
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1498.0 1509 54.3
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1411.7 963 74.8
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1323.1 1162 60.5
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1250.7 1355 53.7
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1200.7 1563 45.4
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1189.5 961 64.2
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1182.2 1554 44.8
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1176.4 940 63.0
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1147.9 1411 46.4
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1141.3 1056 58.3
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1083.9 986 61.0
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1080.9 898 61.5
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 1.0e-303 1047.3 788 69.2
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 6.8e-292 1008.1 884 62.6
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 3.3e-270 936.0 1503 40.5
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 5.4e-265 918.7 674 71.1
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 2.1e-256 890.2 961 51.4
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.0e-243 847.0 726 60.1
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.1e-236 824.7 1233 41.8
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.9e-233 813.9 518 76.8
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 2.1e-224 783.9 516 75.8
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 4.0e-207 726.5 513 69.8
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 7.0e-204 715.7 786 51.7
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.2e-192 678.3 527 64.3
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 2.3e-183 647.5 524 64.1
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.0e-171 607.8 833 48.4
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 3.4e-166 590.5 402 71.6
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 1.9e-153 548.1 459 63.2
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 7.3e-153 546.2 439 64.5
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.7e-146 525.0 578 54.0
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 2.1e-144 518.1 327 78.3
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 9.9e-142 509.2 685 43.9
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 3.9e-138 497.3 893 37.1
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 1.3e-128 465.7 377 62.3
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 1.1e-127 462.6 420 58.6
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 2.6e-126 458.0 312 74.4
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 9.3e-116 422.9 392 56.6
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 5.3e-111 407.1 732 38.7
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 2.2e-93 348.6 282 66.7
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.9e-92 345.5 383 54.8
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.8e-88 331.6 421 45.6
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.8e-82 312.4 262 62.6
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 2.0e-81 308.9 837 31.7
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 2.8e-75 288.5 346 47.4
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 9.8e-65 253.4 212 66.0
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 4.9e-64 251.1 1213 25.2
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 6.0e-62 244.2 256 54.3
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 6.0e-62 244.2 256 54.3
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 3.3e-52 211.8 169 64.5
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 2.3e-50 205.7 194 60.8
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 3.1e-50 205.3 230 49.6
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 1.9e-44 186.0 272 42.3
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 3.6e-43 181.8 145 65.5
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.8e-42 179.5 142 64.1
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 4.0e-42 178.3 163 58.3
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 6.8e-42 177.6 450 29.6
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.7e-40 172.9 300 38.3
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 6.0e-38 164.5 101 77.2
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 6.0e-38 164.5 129 65.1
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 1.9e-36 159.5 162 51.2
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 9.0e-34 150.6 119 62.2
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 9.0e-34 150.6 202 39.6
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.3e-32 146.7 109 69.7
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 1.9e-31 142.9 169 47.9
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.1e-27 129.4 103 63.1
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 6.9e-26 124.4 129 48.8
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 1.2e-25 123.6 116 55.2
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 2.2e-24 119.4 126 56.3
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 1.1e-23 117.1 144 51.4
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 1.6e-22 113.2 97 56.7
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.6e-22 113.2 109 53.2
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 7.9e-22 110.9 91 61.5
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 4.3e-20 105.1 86 58.1
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 1.1e-18 100.5 150 40.7
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 3.2e-15 89.0 71 66.2
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 7.1e-15 87.8 58 79.3
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.0e-13 82.4 109 46.8
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 3.9e-13 82.0 68 61.8
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 6.9e-10 71.2 73 57.5
MBI08_g18763_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D010488 6.9e-10 71.2 42 88.1
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 2.0e-09 69.7 43 79.1
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.7e-08 66.6 33 87.9
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.2e-08 66.2 125 42.4
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.2e-08 66.2 43 81.4
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 2.2e-08 66.2 42 78.6
Lsat_1_v5_gn_8_83220 Lactuca sativa HOM05D003492 ORTHO05D016080 2.9e-08 65.9 59 55.9
Lsat_1_v5_gn_6_70980 Lactuca sativa HOM05D000917 ORTHO05D016080 4.9e-08 65.1 53 64.2
MBI05_g32466_MAGBIO Magnolia biondii HOM05D000170 ORTHO05D010488 4.9e-08 65.1 76 51.3
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 6.5e-08 64.7 44 63.6
Lsat_1_v5_gn_1_119241 Lactuca sativa HOM05D003492 ORTHO05D016080 1.9e-07 63.2 70 47.1
Sabra10G0144400 Salix brachista HOM05D003492 ORTHO05D019467 4.2e-07 62.0 126 36.5
Actinidia02220 Actinidia chinensis HOM05D003492 ORTHO05D005115 5.5e-07 61.6 38 73.7


User provided reference genes

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