Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0003 Trochodendron aralioides HOM05D008555 ORTHO05D010760 0.0e+00 1114.0 606 100.0
Nn2g12801 Nelumbo nucifera HOM05D008555 ORTHO05D010760 1.0e-122 444.9 614 46.1
Dinv37190 Davidia involucrata HOM05D008555 ORTHO05D010760 1.4e-116 424.5 708 44.6
GSVIVG01034198001 Vitis vinifera HOM05D008555 ORTHO05D010760 1.9e-113 414.1 613 46.0
QL07p031190 Quercus lobata HOM05D008555 ORTHO05D010760 9.7e-94 348.6 612 40.7
QL07p047905 Quercus lobata HOM05D008555 ORTHO05D010760 2.8e-93 347.1 612 40.7
MBI05_g06539_MAGBIO Magnolia biondii HOM05D008555 ORTHO05D010760 5.0e-82 309.7 457 46.0
Cfa017405 Carpinus fangiana HOM05D008555 ORTHO05D010760 5.2e-79 299.7 760 34.6
Haze_20761 Corylus avellana HOM05D008555 ORTHO05D010760 2.0e-75 287.7 703 34.9
CSS0010375 Camellia sinensis var. sinensis HOM05D008555 ORTHO05D010760 1.2e-72 278.5 671 34.6
Aqoxy4G02966 Aquilegia oxysepala HOM05D008555 ORTHO05D010760 9.8e-70 268.9 629 36.4
Rhsim05G0190300 Rhododendron simsii HOM05D008555 ORTHO05D010760 4.5e-67 260.0 656 35.2
Thecc.05G042000 Theobroma cacao HOM05D008555 ORTHO05D010760 7.7e-67 259.2 626 35.1
Gohir.A09G157300 Gossypium hirsutum HOM05D008555 ORTHO05D010760 4.3e-65 253.4 619 34.2
Gohir.D09G152600 Gossypium hirsutum HOM05D008555 ORTHO05D010760 6.8e-63 246.1 622 34.1
MD04G1125500 Malus domestica HOM05D008555 ORTHO05D010760 2.0e-62 244.6 625 33.4
FAN09G2752 Fragaria x ananassa HOM05D008555 ORTHO05D010760 4.9e-61 240.0 624 34.5
Prupe.6G252400 Prunus persica HOM05D008555 ORTHO05D010760 4.9e-61 240.0 286 51.4
Duzib093G2048 Durio zibethinus HOM05D008555 ORTHO05D010760 6.4e-61 239.6 644 34.0
FAN05G3093 Fragaria x ananassa HOM05D008555 ORTHO05D010760 1.8e-60 238.0 623 33.7
Manes.08G133801 Manihot esculenta HOM05D008555 ORTHO05D010760 2.0e-59 234.6 615 33.5
Hund09315 Selenicereus undatus HOM05D008555 ORTHO05D010760 7.8e-59 232.6 289 47.8
FvH4_6g14100 Fragaria vesca HOM05D008555 ORTHO05D010760 5.0e-58 229.9 623 33.2
PSO384G5088 Papaver somniferum HOM05D008555 ORTHO05D010760 5.0e-58 229.9 669 32.1
Sc20g0004840 Simmondsia chinensis HOM05D008555 ORTHO05D010760 1.5e-57 228.4 423 40.7
PSO339G2550 Papaver somniferum HOM05D008555 ORTHO05D010760 5.6e-57 226.5 460 35.9
HPP92_014313 Vanilla planifolia HOM05D008555 ORTHO05D010760 4.0e-55 220.3 282 44.3
FAN02G2195 Fragaria x ananassa HOM05D008555 ORTHO05D010760 1.1e-52 212.2 614 30.9
SGA_v2.0_scaffold126G33802 Striga asiatica HOM05D008555 ORTHO05D010760 3.2e-52 210.7 302 43.4
SalBow3G1082 Salvia bowleyana HOM05D008555 ORTHO05D010760 5.4e-52 209.9 286 45.8
Cc06_g02800 Coffea canephora HOM05D008555 ORTHO05D010760 6.0e-51 206.5 199 52.8
Migut.J00343 Erythranthe guttata HOM05D008555 ORTHO05D010760 7.8e-51 206.1 429 36.1
Eucgr.A01250 Eucalyptus grandis HOM05D008555 ORTHO05D010760 6.6e-50 203.0 430 34.9
Lsat_1_v5_gn_8_82700 Lactuca sativa HOM05D008555 ORTHO05D010760 1.5e-49 201.8 282 43.3
AUR62019574 Chenopodium quinoa HOM05D008555 ORTHO05D010760 2.1e-48 198.0 287 44.3
RcHm_v2.0_Chr3g0467001 Rosa chinensis HOM05D008555 ORTHO05D010760 3.4e-46 190.7 589 32.8
EL10Ac1g01982 Beta vulgaris HOM05D008555 ORTHO05D010760 7.5e-46 189.5 289 44.3
AUR62042775 Chenopodium quinoa HOM05D008555 ORTHO05D010760 6.4e-45 186.4 287 42.5
HanXRQChr04g0124781 Helianthus annuus HOM05D008555 ORTHO05D010760 3.9e-42 177.2 197 46.2
ECA236G1276 Erigeron canadensis HOM05D008555 ORTHO05D010760 2.1e-40 171.4 280 39.6
vmacro20136 Vaccinium macrocarpon HOM05D008555 ORTHO05D010760 6.2e-40 169.9 449 33.0
Gorai.006G174100 Gossypium raimondii HOM05D008555 ORTHO05D010760 3.5e-35 154.1 529 31.6
Lsat_1_v5_gn_3_51821 Lactuca sativa HOM05D008555 ORTHO05D010760 1.1e-28 132.5 166 45.2
Oeu024357.1 Olea europaea HOM05D008555 ORTHO05D010760 2.9e-21 107.8 489 27.8
COL.COLO4_14830 Corchorus olitorius HOM05D008555 ORTHO05D010760 1.5e-17 95.5 665 23.6
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 6.9e-07 60.1 168 27.4
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.2e-06 59.3 126 29.4
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 2.0e-06 58.5 206 27.7
A01p35970 Brassica napus HOM05D001613 ORTHO05D001556 3.4e-06 57.8 132 29.5
BraA01t03678Z Brassica rapa HOM05D001613 ORTHO05D001556 3.4e-06 57.8 132 29.5
BcaB04g20763 Brassica carinata HOM05D001613 ORTHO05D001556 4.5e-06 57.4 132 29.5
Aa31LG8G5210 Aethionema arabicum HOM05D001613 ORTHO05D001556 5.8e-06 57.0 132 29.5
AL3G31670 Arabidopsis lyrata HOM05D001613 ORTHO05D001556 5.8e-06 57.0 132 29.5
AT3G18380 Arabidopsis thaliana HOM05D001613 ORTHO05D001556 5.8e-06 57.0 132 29.5
C01p45840 Brassica napus HOM05D001613 ORTHO05D001556 5.8e-06 57.0 132 29.5
BolC1t04546H Brassica oleracea HOM05D001613 ORTHO05D001556 5.8e-06 57.0 132 29.5
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 7.6e-06 56.6 162 29.0


User provided reference genes

Program Settings