Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 1.8e-72 275.8 138 100.0
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 2.1e-52 209.1 119 88.2
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 2.1e-52 209.1 119 88.2
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 1.8e-51 206.1 119 87.4
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 3.9e-51 204.9 118 87.3
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 5.2e-51 204.5 116 87.9
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 5.2e-51 204.5 118 87.3
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 5.2e-51 204.5 118 86.4
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 6.7e-51 204.1 119 86.6
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.1e-50 203.4 118 85.6
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 2.0e-50 202.6 118 86.4
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 3.3e-50 201.8 119 87.4
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 5.7e-50 201.1 118 85.6
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 5.7e-50 201.1 119 84.0
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 5.7e-50 201.1 118 84.7
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 7.4e-50 200.7 119 84.9
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 9.7e-50 200.3 118 85.6
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.3e-49 199.9 119 85.7
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 1.3e-49 199.9 119 84.0
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 1.7e-49 199.5 114 86.8
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.7e-49 199.5 119 83.2
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 1.7e-49 199.5 117 83.8
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 2.2e-49 199.1 118 83.1
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 2.8e-49 198.7 118 85.6
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 2.8e-49 198.7 111 89.2
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 3.7e-49 198.4 112 86.6
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 8.2e-49 197.2 117 83.8
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 1.1e-48 196.8 118 82.2
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.4e-48 196.4 118 83.9
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 1.4e-48 196.4 118 83.1
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.4e-48 196.4 111 86.5
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.8e-48 196.1 118 80.5
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 1.8e-48 196.1 118 80.5
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 1.8e-48 196.1 112 85.7
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 2.4e-48 195.7 118 79.7
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.4e-48 195.7 118 79.7
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 2.4e-48 195.7 118 79.7
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 2.4e-48 195.7 118 79.7
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.4e-48 195.7 118 79.7
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 2.4e-48 195.7 118 81.4
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 2.4e-48 195.7 118 83.9
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 3.1e-48 195.3 110 88.2
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.1e-48 195.3 119 81.5
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 3.1e-48 195.3 119 82.4
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 4.1e-48 194.9 118 80.5
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.1e-48 194.9 111 84.7
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 4.1e-48 194.9 118 81.4
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 5.3e-48 194.5 111 85.6
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 7.0e-48 194.1 118 82.2
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 9.1e-48 193.7 115 81.7
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 9.1e-48 193.7 118 81.4
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.1e-48 193.7 128 77.3
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 9.1e-48 193.7 115 84.3
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 9.1e-48 193.7 118 81.4
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 1.2e-47 193.4 118 79.7
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 1.6e-47 193.0 112 83.9
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.6e-47 193.0 113 83.2
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 2.0e-47 192.6 122 78.7
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 2.6e-47 192.2 115 82.6
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.6e-47 192.2 119 80.7
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 2.6e-47 192.2 113 83.2
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 3.5e-47 191.8 113 84.1
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 4.5e-47 191.4 114 84.2
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 4.5e-47 191.4 118 82.2
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 4.5e-47 191.4 118 79.7
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 5.9e-47 191.0 119 80.7
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 5.9e-47 191.0 122 77.9
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 5.9e-47 191.0 115 80.9
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 5.9e-47 191.0 118 81.4
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 5.9e-47 191.0 118 78.8
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 5.9e-47 191.0 108 87.0
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 7.7e-47 190.7 111 84.7
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 7.7e-47 190.7 118 82.2
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 7.7e-47 190.7 149 69.1
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 7.7e-47 190.7 115 82.6
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 1.0e-46 190.3 110 84.5
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 1.3e-46 189.9 115 82.6
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 1.3e-46 189.9 111 83.8
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 1.7e-46 189.5 113 84.1
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 2.2e-46 189.1 118 78.0
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 5.0e-46 188.0 108 85.2
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 6.5e-46 187.6 119 80.7
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 8.5e-46 187.2 115 80.9
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.1e-45 186.8 112 82.1
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 1.1e-45 186.8 107 86.0
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 1.1e-45 186.8 111 82.0
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.1e-45 186.8 111 81.1
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 2.5e-45 185.7 110 83.6
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 1.2e-44 183.3 113 78.8
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 2.7e-44 182.2 110 84.5
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 4.7e-44 181.4 107 84.1
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 2.3e-43 179.1 112 78.6
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 2.3e-43 179.1 118 76.3
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 4.0e-43 178.3 108 79.6
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 4.0e-43 178.3 112 78.6
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 5.2e-43 177.9 109 80.7
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.6e-42 175.6 110 75.5
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 4.4e-42 174.9 110 78.2
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.7e-41 172.9 109 82.6
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 2.7e-39 165.6 146 60.3
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 3.5e-39 165.2 118 71.2
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 3.5e-39 165.2 118 71.2
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 6.1e-36 154.5 118 69.5
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 5.2e-35 151.4 107 67.3
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 5.2e-35 151.4 100 72.0
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.9e-29 132.9 93 75.3
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.2e-29 131.0 77 80.5
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 2.3e-27 125.9 109 56.0
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 4.0e-27 125.2 85 72.9
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 9.8e-26 120.6 69 84.1
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.6e-23 113.2 77 71.4
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 5.9e-23 111.3 63 81.0
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 3.9e-22 108.6 107 52.3
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 2.5e-21 105.9 107 51.4
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 2.8e-20 102.4 107 52.3
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 1.4e-19 100.1 126 46.8
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.4e-19 100.1 108 50.9
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 4.4e-18 95.1 81 64.2
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 3.2e-16 89.0 77 62.3
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 5.2e-11 71.6 43 79.1
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 1.3e-09 67.0 111 37.8
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.4e-08 61.6 45 71.1
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.1e-08 61.2 29 100.0
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.1e-08 61.2 29 100.0
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 9.2e-08 60.8 79 45.6
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.7e-07 59.3 86 40.7
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 6.0e-07 58.2 53 60.4
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 6.0e-07 58.2 29 96.6
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 1.3e-06 57.0 28 96.4
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.3e-06 57.0 28 92.9
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.3e-06 57.0 28 92.9
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 1.3e-06 57.0 28 92.9
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 2.3e-06 56.2 28 92.9


User provided reference genes

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