Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 2.6e-264 915.6 784 100.0
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 8.4e-90 335.9 312 73.4
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 9.3e-89 332.4 262 82.1
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 7.9e-88 329.3 260 83.1
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 6.3e-85 319.7 438 53.4
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 4.5e-83 313.5 312 72.8
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 8.4e-82 309.3 366 63.9
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.4e-81 308.5 425 51.8
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 2.5e-81 307.8 476 49.4
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 3.2e-81 307.4 428 44.9
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 5.5e-81 306.6 472 49.2
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 6.1e-80 303.1 427 62.3
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.3e-79 302.0 368 57.3
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.3e-79 302.0 368 57.3
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 1.3e-79 302.0 429 51.3
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 5.1e-79 300.1 426 59.2
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.1e-78 298.9 425 51.1
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.5e-78 298.5 368 60.6
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.9e-78 298.1 426 59.4
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.9e-78 298.1 424 50.7
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 1.3e-77 295.4 259 78.0
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 1.3e-77 295.4 437 51.7
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 2.8e-77 294.3 259 77.6
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 6.9e-76 289.7 484 56.0
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.2e-75 288.9 310 66.5
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 1.5e-75 288.5 310 64.8
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.5e-75 288.5 426 59.6
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 2.6e-75 287.7 429 49.9
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 2.6e-75 287.7 300 68.7
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 7.7e-75 286.2 315 67.0
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 7.7e-75 286.2 256 77.0
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.3e-74 285.4 259 76.1
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 2.2e-74 284.6 422 62.6
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.9e-74 284.3 260 73.5
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.9e-74 284.3 260 73.5
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.1e-73 282.3 260 73.1
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 1.9e-73 281.6 259 74.9
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 9.4e-73 279.3 259 75.7
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 2.1e-72 278.1 249 75.9
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 4.6e-72 276.9 428 50.0
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 3.9e-71 273.9 477 54.1
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 1.3e-69 268.9 470 56.4
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 6.3e-69 266.5 430 60.2
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 8.2e-69 266.2 261 71.6
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 8.2e-69 266.2 428 51.2
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 1.1e-68 265.8 431 55.2
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 5.9e-67 260.0 300 62.0
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 5.9e-67 260.0 334 56.3
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 1.0e-66 259.2 430 53.3
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.0e-66 259.2 420 50.0
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 1.1e-65 255.8 381 60.4
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.4e-65 255.4 326 56.7
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 2.5e-65 254.6 326 57.1
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 2.5e-65 254.6 326 57.1
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 4.2e-65 253.8 259 68.3
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 4.2e-65 253.8 428 56.8
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 5.5e-65 253.4 426 56.3
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 5.5e-65 253.4 430 58.1
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.6e-64 251.9 257 67.3
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 7.9e-64 249.6 329 55.3
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.3e-63 248.1 260 67.7
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 2.3e-63 248.1 384 55.2
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 3.0e-63 247.7 328 55.8
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 3.0e-63 247.7 328 55.8
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.1e-62 245.7 326 58.6
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.1e-62 245.7 384 61.5
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 3.3e-62 244.2 391 58.6
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 9.7e-62 242.7 310 59.4
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 3.7e-61 240.7 262 65.3
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 6.3e-61 240.0 255 67.5
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 6.3e-61 240.0 320 56.6
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 2.4e-60 238.0 262 64.9
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 4.1e-60 237.3 262 64.5
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 5.3e-60 236.9 261 66.7
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 1.5e-57 228.8 439 48.7
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 1.9e-57 228.4 262 63.0
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 9.4e-57 226.1 384 56.8
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 2.1e-56 224.9 366 62.8
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 2.7e-56 224.6 417 55.4
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 6.3e-53 213.4 257 61.9
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 3.5e-51 207.6 389 58.4
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 2.1e-48 198.4 389 57.3
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 3.6e-48 197.6 216 70.8
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 1.4e-47 195.7 216 70.4
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.4e-47 195.7 413 39.5
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.8e-47 195.3 218 70.6
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 1.2e-46 192.6 419 52.0
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 2.0e-46 191.8 332 49.7
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 2.0e-46 191.8 399 51.4
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 2.0e-46 191.8 200 55.5
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 4.4e-46 190.7 324 62.7
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 4.4e-46 190.7 230 66.5
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 5.7e-46 190.3 223 66.8
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-44 185.7 324 61.7
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 1.4e-44 185.7 324 57.4
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 1.8e-44 185.3 220 67.3
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 2.5e-41 174.9 138 65.2
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.6e-32 145.6 175 46.3
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 1.8e-31 142.1 262 52.3
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.2e-30 139.4 414 31.9
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 2.4e-28 131.7 87 73.6
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 4.3e-25 120.9 416 27.9
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 1.1e-20 106.3 247 46.2
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 2.4e-20 105.1 68 75.0
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.2e-19 102.8 225 50.2
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 2.8e-16 91.7 233 34.8
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 2.8e-16 91.7 48 87.5
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 3.6e-16 91.3 202 33.2
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.4e-15 89.4 59 72.9
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.4e-15 89.4 59 72.9
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 4.0e-15 87.8 192 34.4
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 1.5e-14 85.9 353 35.1
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 1.6e-08 65.9 71 46.5
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.6e-08 64.7 40 60.0
BcaB04g17239 Brassica carinata HOM05D006707 ORTHO05D008243 6.8e-07 60.5 58 58.6
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 6.8e-07 60.5 37 64.9
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 3.4e-06 58.2 36 63.9


User provided reference genes

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