Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 0.0e+00 2035.8 1056 100.0
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 0.0e+00 1230.3 1032 66.0
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 0.0e+00 1228.4 1058 66.0
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 0.0e+00 1211.8 1055 66.1
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 7.7e-288 994.2 1057 55.7
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 3.8e-271 938.7 1057 54.1
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.0e-267 926.4 944 58.1
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 5.4e-265 918.3 894 58.7
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.5e-264 915.2 975 57.1
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 8.5e-263 911.0 975 57.2
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.8e-260 901.4 967 56.9
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.4e-259 899.0 1033 53.4
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.2e-258 896.3 975 54.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 7.7e-256 887.9 976 55.0
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.3e-255 887.1 976 54.4
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.9e-255 885.9 971 53.9
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.1e-254 884.0 975 54.8
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.7e-250 869.0 968 55.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 3.9e-247 859.0 972 54.5
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.9e-246 856.7 973 52.7
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.5e-246 856.3 971 53.9
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 5.6e-246 855.1 980 53.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.2e-245 854.0 970 53.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.2e-245 854.0 951 53.2
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.2e-244 848.6 974 52.7
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-243 846.7 974 52.6
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 2.6e-243 846.3 965 54.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.3e-242 844.0 977 52.4
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.1e-241 839.0 953 52.8
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 7.3e-238 828.2 959 51.9
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.4e-236 823.9 908 54.4
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 2.3e-236 823.2 959 52.2
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 7.5e-235 818.1 975 52.0
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 4.6e-232 808.9 962 51.0
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-230 803.1 971 49.5
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.6e-229 799.3 973 49.1
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-228 797.7 963 51.5
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.4e-228 797.3 700 65.6
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 3.1e-228 796.2 779 59.2
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.1e-228 796.2 963 51.6
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 4.0e-228 795.8 976 51.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.0e-228 795.8 976 51.1
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-227 792.7 970 49.0
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.4e-225 786.6 963 50.8
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 8.6e-223 778.1 913 52.1
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 5.2e-220 768.8 973 50.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 5.2e-220 768.8 911 51.6
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.4e-218 761.9 902 52.8
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.2e-217 759.6 1011 47.6
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 3.2e-217 759.6 971 48.7
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.2e-216 757.7 946 50.0
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.6e-216 755.7 913 50.7
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 8.7e-215 751.5 908 51.4
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.6e-211 740.0 942 49.9
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 9.9e-211 738.0 914 50.3
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-210 736.1 888 49.4
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 4.9e-210 735.7 964 50.5
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.1e-209 734.6 905 50.5
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-209 734.2 888 49.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.9e-209 733.8 888 48.9
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 4.2e-209 732.6 905 50.7
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.4e-209 732.3 813 54.4
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.4e-204 716.8 919 49.8
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 9.0e-204 714.9 907 49.5
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 4.5e-203 712.6 951 47.7
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.8e-203 712.2 927 50.1
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 5.8e-203 712.2 924 48.6
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.7e-202 710.7 960 47.5
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.7e-202 710.7 929 49.5
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 3.2e-201 706.4 894 49.7
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.6e-200 704.1 979 47.6
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.1e-200 703.7 919 48.1
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.3e-199 700.3 959 47.2
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 7.4e-198 695.3 951 47.4
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 7.4e-198 695.3 963 47.0
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.1e-196 691.4 926 48.7
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 5.3e-196 689.1 959 46.7
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 6.9e-196 688.7 974 47.0
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 4.5e-195 686.0 927 48.0
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.5e-192 676.4 912 47.8
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.6e-192 676.0 866 49.0
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.3e-191 673.7 871 48.7
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 3.9e-191 672.9 952 46.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 8.7e-191 671.8 974 45.9
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 8.7e-191 671.8 899 47.5
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.5e-190 671.0 898 47.7
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-190 670.6 954 45.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 4.3e-190 669.5 955 46.4
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.3e-189 667.9 965 46.8
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.1e-188 664.8 930 47.4
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.3e-188 662.5 871 48.2
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.5e-186 655.6 914 46.9
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 5.5e-185 652.5 952 45.8
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.0e-183 648.3 946 46.9
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 2.2e-181 640.6 978 44.1
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 4.8e-181 639.4 937 44.9
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-176 624.8 947 45.6
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.0e-175 621.7 906 46.2
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 6.9e-172 609.0 894 45.9
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 7.7e-171 605.5 897 44.4
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.9e-169 600.9 699 52.8
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 7.9e-168 595.5 637 55.3
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 5.3e-164 582.8 927 42.5
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.2e-163 581.6 933 43.7
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.2e-163 581.6 1023 40.2
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 2.5e-161 573.9 997 40.8
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.4e-156 558.1 961 41.6
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 5.3e-156 556.2 987 41.4
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.5e-155 553.5 920 41.5
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 7.7e-155 552.4 908 42.1
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.7e-154 551.2 948 41.2
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.5e-153 548.1 933 43.1
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.5e-153 548.1 796 43.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.5e-153 547.4 901 42.3
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 2.7e-152 543.9 902 41.7
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.5e-150 538.1 902 39.5
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.8e-148 531.2 726 47.9
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.3e-146 524.2 919 42.0
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.8e-146 523.5 726 47.4
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.1e-144 517.7 949 38.7
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.8e-143 514.6 873 43.9
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.3e-143 514.2 940 41.1
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 5.2e-143 513.1 949 40.8
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.7e-142 509.6 1055 36.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 3.7e-141 506.9 934 40.1
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.6e-139 501.5 908 41.3
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 5.9e-139 499.6 951 38.7
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 5.9e-139 499.6 978 40.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.0e-138 498.8 907 41.1
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.1e-137 495.4 1003 39.0
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.1e-137 495.4 1003 39.0
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.7e-133 481.5 526 55.5
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.2e-133 481.1 997 37.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.9e-133 480.7 997 37.4
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 6.4e-133 479.6 954 39.5
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.3e-133 479.2 635 48.5
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 3.2e-132 477.2 954 39.4
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 7.0e-132 476.1 1002 37.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.2e-131 475.3 475 57.7
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.3e-130 471.1 961 39.0
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 6.6e-130 469.5 950 37.8
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 3.7e-125 453.8 591 46.2
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.7e-122 444.9 1043 36.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 2.5e-121 441.0 903 36.5
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.6e-112 410.6 844 37.8
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.2e-104 383.3 1028 34.9
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.4e-103 381.3 452 51.5
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 9.3e-100 369.4 1046 34.0
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.5e-97 361.3 949 33.2
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.5e-94 350.5 1025 33.7
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.1e-87 329.3 640 38.6
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.6e-86 324.7 338 55.9
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 9.3e-84 316.2 289 58.8
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.1e-80 305.1 790 34.2
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 5.7e-73 280.4 1022 31.1
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.8e-72 278.1 388 45.6
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.8e-72 278.1 391 48.8
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 5.5e-60 237.3 378 45.2
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 2.1e-59 235.3 230 57.0
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 9.7e-57 226.5 642 29.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 5.9e-54 217.2 398 41.2
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.6e-49 201.8 293 45.4
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.3e-48 197.2 593 33.4
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 8.8e-42 176.8 280 44.6
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 2.2e-37 162.2 121 63.6
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.9e-37 161.8 155 60.6
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-33 148.7 265 40.4
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.9e-29 135.2 219 41.1
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.6e-27 129.4 108 57.4
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 7.0e-23 114.0 145 45.5
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.7e-22 112.1 113 58.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.1e-18 98.6 114 45.6
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.7e-16 92.8 105 54.3
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 3.3e-12 78.6 137 42.3
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 5.6e-12 77.8 166 38.0
TAR371G1136 Trochodendron aralioides HOM05D030477 ORTHO05D004065 2.8e-11 75.5 39 92.3
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.6e-11 75.1 42 76.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.7e-11 74.7 118 41.5
HPP92_000305 Vanilla planifolia HOM05D000527 ORTHO05D000559 4.7e-11 74.7 108 42.6
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 2.3e-10 72.4 57 57.9
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.0e-10 71.6 140 39.3
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.3e-08 66.6 90 54.4
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.7e-08 65.1 101 40.6


User provided reference genes

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