Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0471 Trochodendron aralioides HOM05D002654 ORTHO05D002430 6.2e-100 367.9 241 100.0
TAR629G0269 Trochodendron aralioides HOM05D002654 ORTHO05D002430 3.3e-53 212.6 240 52.5
TAR371G1053 Trochodendron aralioides HOM05D002654 ORTHO05D002430 3.8e-49 199.1 239 51.5
Nn3g17221 Nelumbo nucifera HOM05D002654 ORTHO05D002430 4.6e-39 165.6 244 41.4
Nn4g23142 Nelumbo nucifera HOM05D002654 ORTHO05D002430 1.9e-32 143.7 244 40.2
Aqoxy3G00669 Aquilegia oxysepala HOM05D002654 ORTHO05D002430 2.7e-31 139.8 239 37.7
Dinv38698 Davidia involucrata HOM05D002654 ORTHO05D002430 3.9e-30 136.0 212 38.2
CiPaw.06G084100 Carya illinoinensis HOM05D002654 ORTHO05D002430 1.1e-29 134.4 238 37.8
Dinv34160 Davidia involucrata HOM05D002654 ORTHO05D002430 1.5e-29 134.0 241 38.6
Ciclev10031315m.g Citrus clementina HOM05D002654 ORTHO05D002430 1.3e-28 131.0 241 36.5
CSS0017824 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 2.2e-28 130.2 242 39.3
CSS0046015 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 2.8e-28 129.8 242 39.3
Dinv16639 Davidia involucrata HOM05D002654 ORTHO05D002430 2.8e-28 129.8 233 39.1
GSVIVG01008021001 Vitis vinifera HOM05D002654 ORTHO05D002430 5.3e-27 125.6 210 38.1
CiPaw.05G136200 Carya illinoinensis HOM05D002654 ORTHO05D002430 3.8e-25 119.4 160 47.5
QL03p062934 Quercus lobata HOM05D002654 ORTHO05D002430 6.5e-25 118.6 161 46.0
QL03p064352 Quercus lobata HOM05D002654 ORTHO05D002430 6.5e-25 118.6 161 46.0
MBI02_g39064_MAGBIO Magnolia biondii HOM05D002654 ORTHO05D002430 5.5e-24 115.5 238 34.9
Duzib251G0139 Durio zibethinus HOM05D002654 ORTHO05D002430 7.2e-24 115.2 240 36.2
Hma1.2p1_0265F.1_g106720 Hydrangea macrophylla HOM05D002654 ORTHO05D002430 7.2e-24 115.2 243 35.0
Thecc.02G347200 Theobroma cacao HOM05D002654 ORTHO05D002430 7.2e-24 115.2 240 36.7
Aqoxy3G03363 Aquilegia oxysepala HOM05D002654 ORTHO05D002430 9.4e-24 114.8 243 35.4
MBI05_g08278_MAGBIO Magnolia biondii HOM05D002654 ORTHO05D002430 4.7e-23 112.5 234 35.5
Gorai.005G141100 Gossypium raimondii HOM05D002654 ORTHO05D002430 6.1e-23 112.1 240 35.8
Eucgr.G02509 Eucalyptus grandis HOM05D002654 ORTHO05D002430 1.4e-22 110.9 233 36.5
PSO339G6607 Papaver somniferum HOM05D002654 ORTHO05D002430 1.4e-22 110.9 243 35.0
Cc11_g13080 Coffea canephora HOM05D002654 ORTHO05D002430 3.9e-22 109.4 217 34.1
Duzib205G1664 Durio zibethinus HOM05D002654 ORTHO05D002430 2.0e-21 107.1 219 33.3
Gohir.D02G125400 Gossypium hirsutum HOM05D002654 ORTHO05D002430 2.0e-21 107.1 240 35.0
Cpa.g.sc128.17 Carica papaya HOM05D002654 ORTHO05D002430 1.3e-20 104.4 242 35.1
Dinv19955 Davidia involucrata HOM05D000087 ORTHO05D000439 1.3e-20 104.4 195 33.8
Hma1.2p1_0795F.1_g218740 Hydrangea macrophylla HOM05D002654 ORTHO05D002430 1.7e-20 104.0 242 33.5
Atru.chr11.1798 Acer truncatum HOM05D002654 ORTHO05D002430 3.7e-20 102.8 247 34.8
Actinidia19874 Actinidia chinensis HOM05D002654 ORTHO05D002430 3.7e-20 102.8 239 31.8
Gohir.A03G098250 Gossypium hirsutum HOM05D002654 ORTHO05D002430 3.7e-20 102.8 241 35.3
Gohir.A12G105550 Gossypium hirsutum HOM05D002654 ORTHO05D002430 3.7e-20 102.8 241 35.3
PSO801G0551 Papaver somniferum HOM05D002654 ORTHO05D002430 4.8e-20 102.4 243 33.7
Peaxi162Scf00541g00022 Petunia axillaris HOM05D002654 ORTHO05D002430 1.1e-19 101.3 241 33.2
Rhsim12G0063400 Rhododendron simsii HOM05D002654 ORTHO05D002430 1.4e-19 100.9 228 31.6
Duzib084G1162 Durio zibethinus HOM05D002654 ORTHO05D002430 2.4e-19 100.1 142 41.5
Sabra15G0087900 Salix brachista HOM05D002654 ORTHO05D002430 3.1e-19 99.8 238 30.7
GSVIVG01019998001 Vitis vinifera HOM05D002654 ORTHO05D002430 3.1e-19 99.8 238 34.0
Glyma.01G046600 Glycine max HOM05D002654 ORTHO05D002430 4.1e-19 99.4 237 35.4
MD16G1073600 Malus domestica HOM05D002654 ORTHO05D002430 4.1e-19 99.4 252 33.7
Thecc.03G084900 Theobroma cacao HOM05D002654 ORTHO05D002430 5.3e-19 99.0 138 42.0
Potri.015G062600 Populus trichocarpa HOM05D002654 ORTHO05D002430 7.0e-19 98.6 212 32.1
Eucgr.B00480 Eucalyptus grandis HOM05D002654 ORTHO05D002430 1.6e-18 97.4 138 44.9
Glyma.02G106800 Glycine max HOM05D002654 ORTHO05D002430 1.6e-18 97.4 223 34.5
Nitab4.5_0000703g0220 Nicotiana tabacum HOM05D002654 ORTHO05D002430 2.0e-18 97.1 245 31.8
Phvul.002G086000 Phaseolus vulgaris HOM05D002654 ORTHO05D002430 3.5e-18 96.3 240 35.0
Prupe.1G273300 Prunus persica HOM05D002654 ORTHO05D002430 3.5e-18 96.3 238 31.9
Cfa008990 Carpinus fangiana HOM05D002654 ORTHO05D002430 4.5e-18 95.9 159 39.6
Duzib268G0299 Durio zibethinus HOM05D002654 ORTHO05D002430 5.9e-18 95.5 241 34.0
Nitab4.5_0007501g0020 Nicotiana tabacum HOM05D002654 ORTHO05D002430 7.7e-18 95.1 244 32.8
Manes.01G186300 Manihot esculenta HOM05D002654 ORTHO05D002430 1.3e-17 94.4 230 33.0
Manes.05G100700 Manihot esculenta HOM05D002654 ORTHO05D002430 2.9e-17 93.2 244 32.0
VMungo1215G1652 Vigna mungo HOM05D002654 ORTHO05D002430 3.8e-17 92.8 237 33.8
CSS0036856 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 8.5e-17 91.7 210 33.8
Prupe.5G191900 Prunus persica HOM05D002654 ORTHO05D002430 8.5e-17 91.7 139 39.6
PGSC0003DMG400031263 Solanum tuberosum HOM05D002654 ORTHO05D002430 8.5e-17 91.7 221 31.2
CSS0037456 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 1.1e-16 91.3 210 33.3
Lalb_Chr17g0340621 Lupinus albus HOM05D002654 ORTHO05D002430 1.1e-16 91.3 235 33.2
CAN.G58.27 Capsicum annuum HOM05D002654 ORTHO05D002430 2.5e-16 90.1 220 33.6
Solyc05g007480.1 Solanum lycopersicum HOM05D002654 ORTHO05D002430 4.2e-16 89.4 222 31.1
QL10p016685 Quercus lobata HOM05D002654 ORTHO05D002430 9.4e-16 88.2 127 43.3
PGR142G0432 Punica granatum HOM05D002654 ORTHO05D002430 1.2e-15 87.8 146 39.0
COL.COLO4_24533 Corchorus olitorius HOM05D002654 ORTHO05D002430 2.7e-15 86.7 215 30.7
Lalb_Chr10g0098231 Lupinus albus HOM05D002654 ORTHO05D002430 2.7e-15 86.7 231 32.0
Manes.06G093600 Manihot esculenta HOM05D002654 ORTHO05D002430 3.6e-15 86.3 221 31.2
CiPaw.11G043200 Carya illinoinensis HOM05D002654 ORTHO05D002430 8.0e-15 85.1 213 28.2
MD14G1198800 Malus domestica HOM05D002654 ORTHO05D002430 8.0e-15 85.1 211 33.2
Haze_07337 Corylus avellana HOM05D002654 ORTHO05D002430 1.4e-14 84.3 214 29.4
Phvul.003G049800 Phaseolus vulgaris HOM05D002654 ORTHO05D002430 1.4e-14 84.3 157 38.9
Actinidia37635 Actinidia chinensis HOM05D002654 ORTHO05D002430 1.8e-14 84.0 209 32.5
Cfa018955 Carpinus fangiana HOM05D002654 ORTHO05D002430 1.8e-14 84.0 210 30.5
DCAR_016544 Daucus carota HOM05D002654 ORTHO05D002430 2.3e-14 83.6 205 30.7
vmacro01254 Vaccinium macrocarpon HOM05D002654 ORTHO05D002430 2.3e-14 83.6 232 29.7
Medtr5g040340 Medicago truncatula HOM05D002654 ORTHO05D002430 3.0e-14 83.2 220 31.8
Sopen05g003360 Solanum pennellii HOM05D002654 ORTHO05D002430 3.0e-14 83.2 221 29.4
Lj2g0004439 Lotus japonicus HOM05D002654 ORTHO05D002430 2.0e-13 80.5 220 31.8
Sed0007158 Sechium edule HOM05D002654 ORTHO05D002430 2.0e-13 80.5 138 33.3
MSTRG.7806 Avicennia marina HOM05D002654 ORTHO05D002430 3.3e-13 79.7 219 31.1
Actinidia04902 Actinidia chinensis HOM05D000001 ORTHO05D009295 4.4e-13 79.3 213 32.9
Oeu054885.1 Olea europaea HOM05D002654 ORTHO05D002430 5.7e-13 79.0 227 29.5
Manes.10G056666 Manihot esculenta HOM05D002654 ORTHO05D002430 7.5e-13 78.6 147 39.5
ClCG05G024340 Citrullus lanatus HOM05D002654 ORTHO05D002430 9.7e-13 78.2 154 40.3
RcHm_v2.0_Chr4g0439931 Rosa chinensis HOM05D002654 ORTHO05D002430 9.7e-13 78.2 215 31.6
Sed0008815 Sechium edule HOM05D002654 ORTHO05D002430 9.7e-13 78.2 163 39.3
Cpa.g.sc111.2 Carica papaya HOM05D002654 ORTHO05D002430 1.7e-12 77.4 136 43.4
VMungo0251G1966 Vigna mungo HOM05D002654 ORTHO05D002430 3.7e-12 76.3 143 38.5
PSO017G0875 Papaver somniferum HOM05D002654 ORTHO05D002430 4.8e-12 75.9 174 32.8
Gohir.A12G176900 Gossypium hirsutum HOM05D002654 ORTHO05D002430 6.3e-12 75.5 136 38.2
ClCG04G012340 Citrullus lanatus HOM05D002654 ORTHO05D002430 8.2e-12 75.1 138 31.9
MD06G1192200 Malus domestica HOM05D002654 ORTHO05D002430 1.8e-11 73.9 223 29.1
RcHm_v2.0_Chr7g0181121 Rosa chinensis HOM05D002654 ORTHO05D002430 1.8e-11 73.9 212 27.4
COL.COLO4_23006 Corchorus olitorius HOM05D002654 ORTHO05D002430 2.4e-11 73.6 207 32.9
FAN04G1767 Fragaria x ananassa HOM05D002654 ORTHO05D002430 2.4e-11 73.6 209 28.2
CiPaw.12G013900 Carya illinoinensis HOM05D002654 ORTHO05D002430 3.1e-11 73.2 137 35.0
Oeu054883.1 Olea europaea HOM05D002654 ORTHO05D002430 4.1e-11 72.8 219 29.7
HanXRQChr12g0380721 Helianthus annuus HOM05D002654 ORTHO05D002430 7.0e-11 72.0 126 40.5
ATR0564G399 Amborella trichopoda HOM05D002654 ORTHO05D002430 9.1e-11 71.6 233 26.6
MELO3C008539.2 Cucumis melo HOM05D002654 ORTHO05D002430 9.1e-11 71.6 124 41.9
Lsat_1_v5_gn_4_9921 Lactuca sativa HOM05D002654 ORTHO05D002430 9.1e-11 71.6 135 40.0
Sed0002318 Sechium edule HOM05D002654 ORTHO05D002430 9.1e-11 71.6 142 38.0
Ah.02g129730 Amaranthus hybridus HOM05D002654 ORTHO05D002430 1.2e-10 71.2 171 38.0
DCAR_024160 Daucus carota HOM05D002654 ORTHO05D002430 1.2e-10 71.2 231 25.5
FvH4_5g15090 Fragaria vesca HOM05D002654 ORTHO05D002430 1.2e-10 71.2 209 27.8
FAN18G2581 Fragaria x ananassa HOM05D002654 ORTHO05D002430 1.2e-10 71.2 209 27.8
Psat2g120280 Pisum sativum HOM05D002654 ORTHO05D002430 1.2e-10 71.2 128 39.8
CsaV3_1G005380 Cucumis sativus L. HOM05D002654 ORTHO05D002430 1.6e-10 70.9 98 37.8
Nitab4.5_0002352g0050 Nicotiana tabacum HOM05D002654 ORTHO05D002430 1.6e-10 70.9 212 30.2
FAN13G3070 Fragaria x ananassa HOM05D002654 ORTHO05D002430 2.0e-10 70.5 209 27.8
TPR.G37132 Trifolium pratense HOM05D002654 ORTHO05D002430 2.7e-10 70.1 220 28.2
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 3.5e-10 69.7 156 30.1
Rhsim08G0155700 Rhododendron simsii HOM05D002654 ORTHO05D002430 3.5e-10 69.7 209 30.6
CsaV3_5G032620 Cucumis sativus L. HOM05D002654 ORTHO05D002430 5.9e-10 68.9 149 36.9
FAN08G1738 Fragaria x ananassa HOM05D002654 ORTHO05D002430 5.9e-10 68.9 209 27.8
Nitab4.5_0000269g0010 Nicotiana tabacum HOM05D002654 ORTHO05D002430 5.9e-10 68.9 214 28.5
Ca_04788_v3 Cicer arietinum L. HOM05D002654 ORTHO05D002430 7.7e-10 68.6 217 30.0
MELO3C012089.2 Cucumis melo HOM05D002654 ORTHO05D002430 7.7e-10 68.6 149 36.9
TWI60G0873 Tripterygium wilfordii HOM05D002654 ORTHO05D002430 7.7e-10 68.6 133 38.3
Oeu033362.1 Olea europaea HOM05D002654 ORTHO05D002430 1.0e-09 68.2 225 27.6
Gohir.D12G179400 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.3e-09 67.8 136 36.8
PGR119G1217 Punica granatum HOM05D002654 ORTHO05D002430 1.3e-09 67.8 248 28.6
Ca_24217_v3 Cicer arietinum L. HOM05D002654 ORTHO05D002430 2.9e-09 66.6 156 37.8
FvH4_4g31450 Fragaria vesca HOM05D002654 ORTHO05D002430 2.9e-09 66.6 221 29.9
Lsat_1_v5_gn_8_53121 Lactuca sativa HOM05D002654 ORTHO05D002430 2.9e-09 66.6 124 38.7
Aa31LG2G7400 Aethionema arabicum HOM05D002654 ORTHO05D002430 3.8e-09 66.2 222 28.4
Ciclev10020017m.g Citrus clementina HOM05D002654 ORTHO05D002430 6.5e-09 65.5 140 37.9
Peaxi162Scf00274g00075 Petunia axillaris HOM05D002654 ORTHO05D002430 1.1e-08 64.7 135 40.0
AT2G02950 Arabidopsis thaliana HOM05D002654 ORTHO05D002430 1.5e-08 64.3 218 29.8
Cc04_g16770 Coffea canephora HOM05D000087 ORTHO05D000439 1.5e-08 64.3 138 34.1
FAN17G2513 Fragaria x ananassa HOM05D002654 ORTHO05D002430 1.5e-08 64.3 221 29.4
Lalb_Chr09g0329321 Lupinus albus HOM05D002654 ORTHO05D002430 1.5e-08 64.3 231 29.0
Nitab4.5_0000842g0040 Nicotiana tabacum HOM05D002654 ORTHO05D002430 1.5e-08 64.3 235 29.4
AL5G12550 Arabidopsis lyrata HOM05D002654 ORTHO05D002430 1.9e-08 63.9 224 29.5
Sc12g0006310 Simmondsia chinensis HOM05D002654 ORTHO05D002430 3.2e-08 63.2 123 35.0
BcaC06g31210 Brassica carinata HOM05D002654 ORTHO05D002430 4.2e-08 62.8 215 27.9
ClCG11G009990 Citrullus lanatus HOM05D002654 ORTHO05D002430 4.2e-08 62.8 143 38.5
Nitab4.5_0012137g0010 Nicotiana tabacum HOM05D002654 ORTHO05D002430 4.2e-08 62.8 211 28.0
Sc04g0008200 Simmondsia chinensis HOM05D002654 ORTHO05D002430 4.2e-08 62.8 130 41.5
THA.LOC104801849 Tarenaya hassleriana HOM05D002654 ORTHO05D002430 4.2e-08 62.8 227 27.3
CARHR145350 Cardamine hirsuta HOM05D002654 ORTHO05D002430 5.5e-08 62.4 207 28.0
Psat4g134160 Pisum sativum HOM05D002654 ORTHO05D002430 5.5e-08 62.4 222 27.5
Sp2g13980 Schrenkiella parvula HOM05D002654 ORTHO05D002430 5.5e-08 62.4 224 27.2
Sed0007876 Sechium edule HOM05D002654 ORTHO05D002430 5.5e-08 62.4 137 28.5
CsaV3_2G010730 Cucumis sativus L. HOM05D002654 ORTHO05D002430 7.2e-08 62.0 137 41.6
BcaB07g30689 Brassica carinata HOM05D002654 ORTHO05D002430 9.4e-08 61.6 239 26.8
CAN.G628.23 Capsicum annuum HOM05D002654 ORTHO05D002430 9.4e-08 61.6 215 28.4
FAN22G0634 Fragaria x ananassa HOM05D002654 ORTHO05D002430 9.4e-08 61.6 221 29.0
Glyma.18G120000 Glycine max HOM05D002654 ORTHO05D002430 9.4e-08 61.6 142 37.3
PGSC0003DMG400033102 Solanum tuberosum HOM05D002654 ORTHO05D002430 9.4e-08 61.6 210 28.1
ECA234G4854 Erigeron canadensis HOM05D000087 ORTHO05D000439 1.2e-07 61.2 123 38.2
Sopen06g027150 Solanum pennellii HOM05D002654 ORTHO05D002430 1.2e-07 61.2 214 28.5
Carub.0005s0181 Capsella rubella HOM05D002654 ORTHO05D002430 1.6e-07 60.8 218 27.5
Medtr8g055860 Medicago truncatula HOM05D002654 ORTHO05D002430 2.1e-07 60.5 149 34.2
CSS0006941 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 3.6e-07 59.7 206 29.1
arahy.Tifrunner.gnm1.ann1.63G1Z6 Arachis hypogaea HOM05D002654 ORTHO05D002430 4.7e-07 59.3 220 26.8
Solyc06g069880.1 Solanum lycopersicum HOM05D002654 ORTHO05D002430 4.7e-07 59.3 214 28.0
Ah.03g135150 Amaranthus hybridus HOM05D002654 ORTHO05D002430 6.1e-07 58.9 172 32.6
CARHR014700 Cardamine hirsuta HOM05D002654 ORTHO05D002430 8.0e-07 58.5 96 39.6
Thhalv10004196m.g Eutrema salsugineum HOM05D002654 ORTHO05D002430 8.0e-07 58.5 164 28.0
Gohir.A07G063650 Gossypium hirsutum HOM05D002654 ORTHO05D002430 8.0e-07 58.5 161 29.2
Gohir.D03G092800 Gossypium hirsutum HOM05D002654 ORTHO05D002430 8.0e-07 58.5 88 40.9
Gorai.003G096700 Gossypium raimondii HOM05D002654 ORTHO05D002430 8.0e-07 58.5 88 40.9
Sp1g12630 Schrenkiella parvula HOM05D002654 ORTHO05D002430 8.0e-07 58.5 129 37.2
AUR62005769 Chenopodium quinoa HOM05D002654 ORTHO05D002430 1.0e-06 58.2 148 35.1
Carub.0001s1396 Capsella rubella HOM05D002654 ORTHO05D002430 1.4e-06 57.8 78 46.2
FAN07G1505 Fragaria x ananassa HOM05D002654 ORTHO05D002430 1.4e-06 57.8 216 28.2
CANSAT64G2692 Cannabis sativa HOM05D002654 ORTHO05D002430 1.8e-06 57.4 106 36.8
Gohir.A03G066300 Gossypium hirsutum HOM05D002654 ORTHO05D002430 2.3e-06 57.0 106 35.8
Gohir.D07G068400 Gossypium hirsutum HOM05D002654 ORTHO05D002430 2.3e-06 57.0 171 28.7
Gorai.001G071900 Gossypium raimondii HOM05D002654 ORTHO05D002430 2.3e-06 57.0 171 28.7
Gorai.008G192500 Gossypium raimondii HOM05D002654 ORTHO05D002430 2.3e-06 57.0 83 42.2
Rhsim08G0156100 Rhododendron simsii HOM05D002654 ORTHO05D002430 2.3e-06 57.0 143 32.2
Thhalv10009661m.g Eutrema salsugineum HOM05D002654 ORTHO05D002430 4.0e-06 56.2 99 38.4
BcaC07g38730 Brassica carinata HOM05D002654 ORTHO05D002430 5.2e-06 55.8 102 37.3
AT1G14280 Arabidopsis thaliana HOM05D002654 ORTHO05D002430 6.8e-06 55.5 82 41.5
Peaxi162Scf00013g00213 Petunia axillaris HOM05D002654 ORTHO05D002430 6.8e-06 55.5 149 34.2
Peaxi162Scf06066g00003 Petunia axillaris HOM05D000087 ORTHO05D002430 6.8e-06 55.5 149 34.2
Psat4g131840 Pisum sativum HOM05D002654 ORTHO05D002430 8.8e-06 55.1 210 27.1


User provided reference genes

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