Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.1e-149 532.3 267 100.0
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.0e-147 525.8 267 98.9
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 7.4e-147 523.9 267 98.9
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 2.1e-88 329.7 246 68.3
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 4.7e-85 318.5 246 65.9
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 5.4e-81 305.1 229 66.8
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 2.1e-80 303.1 238 62.2
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 5.1e-79 298.5 217 66.4
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 1.5e-78 297.0 216 67.1
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 7.3e-78 294.7 220 66.8
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 2.1e-77 293.1 222 65.8
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 2.1e-77 293.1 226 63.7
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 2.8e-77 292.7 241 63.5
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 3.6e-77 292.4 236 64.4
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 1.1e-76 290.8 213 68.1
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 2.6e-75 286.2 230 63.5
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 3.4e-75 285.8 213 66.7
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 5.8e-75 285.0 257 58.0
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 2.2e-74 283.1 214 66.8
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 2.9e-74 282.7 210 63.3
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 3.8e-74 282.3 248 60.1
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 4.9e-74 282.0 210 67.6
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 6.4e-74 281.6 263 56.7
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 3.2e-73 279.3 243 61.7
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 4.2e-73 278.9 223 60.1
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 4.2e-73 278.9 253 56.1
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 5.4e-73 278.5 217 63.6
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 7.1e-73 278.1 206 67.0
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 7.1e-73 278.1 232 61.2
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 7.1e-73 278.1 239 57.3
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 9.3e-73 277.7 210 61.9
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 9.3e-73 277.7 210 61.9
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 9.3e-73 277.7 218 63.8
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.6e-72 275.4 212 63.7
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 4.6e-72 275.4 259 56.4
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 7.9e-72 274.6 250 56.4
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 7.9e-72 274.6 211 63.5
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 1.7e-71 273.5 212 60.8
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 2.3e-71 273.1 219 63.0
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 2.3e-71 273.1 244 55.7
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 5.1e-71 271.9 259 56.4
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 1.5e-70 270.4 225 62.7
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 2.5e-70 269.6 253 55.7
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 5.6e-70 268.5 239 57.3
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 9.6e-70 267.7 214 63.6
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 2.1e-69 266.5 216 60.2
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 1.8e-68 263.5 210 61.9
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 2.4e-68 263.1 240 60.4
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 2.4e-68 263.1 212 59.4
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 2.4e-68 263.1 210 65.2
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 4.0e-68 262.3 218 60.6
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 5.3e-68 261.9 214 60.7
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 9.0e-68 261.2 235 59.1
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 3.4e-67 259.2 252 52.8
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 3.4e-67 259.2 250 56.0
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 3.4e-67 259.2 225 59.1
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 4.5e-67 258.8 219 61.2
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 7.6e-67 258.1 223 53.8
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.3e-66 257.3 225 58.7
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 1.7e-66 256.9 212 59.4
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 2.2e-66 256.5 214 61.2
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 2.9e-66 256.1 227 55.9
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 8.4e-66 254.6 233 58.8
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.1e-65 254.2 209 61.2
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 3.2e-65 252.7 232 57.3
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 2.1e-64 250.0 222 58.6
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 3.5e-64 249.2 225 53.8
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 2.3e-63 246.5 225 52.4
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 3.0e-63 246.1 225 54.2
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 3.9e-63 245.7 225 52.4
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 3.9e-63 245.7 225 52.4
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 5.1e-63 245.4 236 54.7
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 1.5e-62 243.8 219 55.3
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 5.6e-62 241.9 225 53.8
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 7.4e-62 241.5 225 52.9
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 7.4e-62 241.5 224 52.2
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 2.1e-61 240.0 226 52.2
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 2.8e-61 239.6 222 55.4
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 4.8e-61 238.8 225 52.9
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 4.8e-61 238.8 354 42.4
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 6.2e-61 238.4 219 54.8
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 1.3e-58 230.7 225 51.1
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 2.5e-57 226.5 215 52.1
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 1.8e-55 220.3 211 53.1
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 3.9e-55 219.2 238 49.6
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 2.4e-52 209.9 209 49.3
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 4.1e-52 209.1 441 33.8
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 4.5e-51 205.7 183 53.6
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 2.2e-50 203.4 204 51.5
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 2.5e-49 199.9 173 58.4
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 2.5e-49 199.9 206 46.6
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 3.5e-48 196.1 219 45.2
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 1.5e-46 190.7 212 44.3
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 2.4e-44 183.3 160 61.9
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 1.9e-41 173.7 181 53.0
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 3.6e-40 169.5 157 51.0
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 3.6e-40 169.5 205 46.3
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 6.7e-39 165.2 147 61.2
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 1.3e-37 161.0 138 59.4
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 5.3e-36 155.6 157 50.3
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 2.9e-34 149.8 128 57.8
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 2.0e-30 137.1 117 55.6
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 2.4e-28 130.2 97 61.9
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 2.0e-22 110.5 206 31.6
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 9.1e-12 75.1 87 42.5
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 9.1e-12 75.1 57 54.4
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 2.2e-10 70.5 51 62.7
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.1e-08 63.9 118 31.4
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 2.1e-08 63.9 118 31.4
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.1e-08 63.9 118 31.4
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 2.1e-08 63.9 118 31.4
A08p37070 Brassica napus HOM05D006451 ORTHO05D007680 4.7e-08 62.8 132 30.3
Pp3c22_12710 Physcomitrium patens HOM05D001916 ORTHO05D003272 6.1e-08 62.4 123 30.1
TWI56G1135 Tripterygium wilfordii HOM05D005920 ORTHO05D007211 8.0e-08 62.0 127 34.6
AUR62024011 Chenopodium quinoa HOM05D000115 ORTHO05D005317 3.0e-07 60.1 111 34.2
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 3.0e-07 60.1 134 30.6
CiPaw.01G196900 Carya illinoinensis HOM05D006451 ORTHO05D007680 5.2e-07 59.3 120 30.8
Sed0008444 Sechium edule HOM05D002462 ORTHO05D002893 5.2e-07 59.3 105 35.2
CBR_g6631 Chara braunii HOM05D002462 ORTHO05D002893 6.8e-07 58.9 128 27.3
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 6.8e-07 58.9 117 34.2
CANSAT78G2142 Cannabis sativa HOM05D006451 ORTHO05D007680 8.8e-07 58.5 137 29.2
HPP92_009818 Vanilla planifolia HOM05D001916 ORTHO05D003272 8.8e-07 58.5 103 32.0
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 1.2e-06 58.2 118 30.5
Manes.15G032000 Manihot esculenta HOM05D006451 ORTHO05D007680 1.2e-06 58.2 128 30.5
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 1.2e-06 58.2 129 28.7
QL06p001354 Quercus lobata HOM05D006451 ORTHO05D007680 1.2e-06 58.2 117 34.2
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 1.2e-06 58.2 116 31.0
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 1.5e-06 57.8 106 30.2
Os12g0636100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.5e-06 57.8 99 28.3
Sed0026394 Sechium edule HOM05D006451 ORTHO05D007680 1.5e-06 57.8 115 32.2
THA.LOC104826059 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 2.0e-06 57.4 117 30.8
BcaB08g34470 Brassica carinata HOM05D002462 ORTHO05D002893 3.4e-06 56.6 121 31.4
Duzib151G0283 Durio zibethinus HOM05D006451 ORTHO05D007680 3.4e-06 56.6 118 31.4
FAN17G1940 Fragaria x ananassa HOM05D006451 ORTHO05D007680 3.4e-06 56.6 110 32.7
Sc25g0004270 Simmondsia chinensis HOM05D006451 ORTHO05D007680 3.4e-06 56.6 117 32.5
TAR362G1293 Trochodendron aralioides HOM05D006451 ORTHO05D007680 3.4e-06 56.6 116 30.2
Aqoxy5G00331 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 4.4e-06 56.2 113 30.1
MSTRG.4055 Avicennia marina HOM05D006451 ORTHO05D007680 4.4e-06 56.2 108 29.6
A05p03220 Brassica napus HOM05D000115 ORTHO05D005317 4.4e-06 56.2 112 33.0
BraA05t19312Z Brassica rapa HOM05D000115 ORTHO05D005317 4.4e-06 56.2 112 33.0
CSS0014602 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 4.4e-06 56.2 131 32.8
CSS0023735 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 4.4e-06 56.2 131 32.8
AUR62041331 Chenopodium quinoa HOM05D000115 ORTHO05D005317 4.4e-06 56.2 111 32.4
Haze_11218 Corylus avellana HOM05D006451 ORTHO05D007680 5.7e-06 55.8 116 29.3
Manes.03G174100 Manihot esculenta HOM05D006451 ORTHO05D007680 5.7e-06 55.8 116 30.2
Nitab4.5_0000085g0050 Nicotiana tabacum HOM05D006451 ORTHO05D007680 5.7e-06 55.8 124 32.3
FvH4_4g00880 Fragaria vesca HOM05D006451 ORTHO05D007680 7.5e-06 55.5 110 31.8
FAN12G3362 Fragaria x ananassa HOM05D006451 ORTHO05D007680 7.5e-06 55.5 110 31.8
FAN22G0671 Fragaria x ananassa HOM05D006451 ORTHO05D007680 7.5e-06 55.5 110 31.8
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 7.5e-06 55.5 119 29.4
AUR62034703 Chenopodium quinoa HOM05D006451 ORTHO05D007680 9.8e-06 55.1 122 29.5
HanXRQChr17g0541261 Helianthus annuus HOM05D000115 ORTHO05D005317 9.8e-06 55.1 110 30.0
Pp3c7_11180 Physcomitrium patens HOM05D000115 ORTHO05D005317 9.8e-06 55.1 122 30.3
RcHm_v2.0_Chr4g0387501 Rosa chinensis HOM05D006451 ORTHO05D007680 9.8e-06 55.1 127 30.7
Sopen04g029140 Solanum pennellii HOM05D000868 ORTHO05D000711 9.8e-06 55.1 97 25.8
HPP92_001912 Vanilla planifolia HOM05D006451 ORTHO05D007680 9.8e-06 55.1 129 31.0


User provided reference genes

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