Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR410G0006 Trochodendron aralioides HOM05D000123 ORTHO05D000064 2.1e-92 342.4 184 100.0
TAR482G0001 Trochodendron aralioides HOM05D000123 ORTHO05D000064 4.0e-91 338.2 184 98.9
TAR624G1369 Trochodendron aralioides HOM05D000123 ORTHO05D000064 1.2e-55 220.3 179 68.7
TAR629G0544 Trochodendron aralioides HOM05D000123 ORTHO05D000064 2.6e-50 202.6 183 60.7
TAR629G1785 Trochodendron aralioides HOM05D000123 ORTHO05D000064 2.6e-50 202.6 183 60.7
TAR629G0086 Trochodendron aralioides HOM05D000123 ORTHO05D000064 3.2e-48 195.7 183 59.6
Nn6g34458 Nelumbo nucifera HOM05D000123 ORTHO05D000064 4.2e-48 195.3 179 59.8
Nn3g21070 Nelumbo nucifera HOM05D000123 ORTHO05D000064 3.9e-46 188.7 179 57.0
MBI07_g00465_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 4.3e-45 185.3 179 56.4
Aqoxy4G00219 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 2.4e-43 179.5 183 51.4
MBI06_g16693_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 7.6e-42 174.5 181 54.7
TAR410G0001 Trochodendron aralioides HOM05D000123 ORTHO05D000064 6.5e-41 171.4 93 89.2
Dinv11425 Davidia involucrata HOM05D000123 ORTHO05D000064 5.5e-40 168.3 179 53.6
CSS0022783 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 2.7e-39 166.0 179 52.0
CSS0040384 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 2.7e-39 166.0 179 52.0
PSO541G1324 Papaver somniferum HOM05D000123 ORTHO05D000064 5.7e-37 158.3 179 49.7
PSO675G0348 Papaver somniferum HOM05D000123 ORTHO05D000064 3.7e-36 155.6 179 49.7
TAR627G1080 Trochodendron aralioides HOM05D000123 ORTHO05D000064 2.2e-33 146.4 122 63.9
Hma1.2p1_0178F.1_g078350 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 2.7e-31 139.4 179 43.6
ATR0127G001 Amborella trichopoda HOM05D000123 ORTHO05D000064 1.0e-30 137.5 197 43.1
Rhsim06G0124200 Rhododendron simsii HOM05D000123 ORTHO05D000064 1.4e-27 127.1 179 42.5
CDE10G0376 Ceratophyllum demersum HOM05D000123 ORTHO05D000064 4.1e-27 125.6 183 41.5
CDE10G1102 Ceratophyllum demersum HOM05D000123 ORTHO05D000064 4.5e-26 122.1 183 39.9
QL08p042908 Quercus lobata HOM05D000123 ORTHO05D000064 2.2e-25 119.8 182 43.4
Cc05_g09000 Coffea canephora HOM05D000123 ORTHO05D000064 5.0e-25 118.6 171 42.1
Thecc.01G156300 Theobroma cacao HOM05D000123 ORTHO05D000064 4.2e-24 115.5 178 38.8
Oeu028662.1 Olea europaea HOM05D000123 ORTHO05D000064 2.1e-23 113.2 179 38.0
Duzib147G1463 Durio zibethinus HOM05D000123 ORTHO05D000064 4.3e-21 105.5 179 37.4
MD09G1233700 Malus domestica HOM05D000123 ORTHO05D000064 9.7e-21 104.4 174 37.9
Duzib264G0659 Durio zibethinus HOM05D000123 ORTHO05D000064 1.3e-20 104.0 172 37.2
Eucgr.A01948 Eucalyptus grandis HOM05D000123 ORTHO05D000064 1.7e-20 103.6 179 40.2
Oeu032128.1 Olea europaea HOM05D000123 ORTHO05D000064 1.7e-20 103.6 178 37.1
PGR042G2855 Punica granatum HOM05D000123 ORTHO05D000064 1.1e-19 100.9 171 39.8
MSTRG.12834 Avicennia marina HOM05D000123 ORTHO05D000064 1.4e-19 100.5 182 36.8
Prupe.3G108700 Prunus persica HOM05D000123 ORTHO05D000064 9.1e-19 97.8 170 37.1
HPP92_008758 Vanilla planifolia HOM05D000123 ORTHO05D000064 1.2e-18 97.4 172 40.7
COL.COLO4_33654 Corchorus olitorius HOM05D000123 ORTHO05D000064 2.0e-18 96.7 180 37.2
FAN05G2588 Fragaria x ananassa HOM05D000123 ORTHO05D000064 2.6e-18 96.3 179 34.6
FvH4_6g27900 Fragaria vesca HOM05D000123 ORTHO05D000064 1.0e-17 94.4 179 34.1
FAN14G2236 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.3e-17 94.0 179 34.1
FAN02G2331 Fragaria x ananassa HOM05D000123 ORTHO05D000064 2.9e-17 92.8 179 34.1
Potri.011G071700 Populus trichocarpa HOM05D000123 ORTHO05D000064 2.9e-17 92.8 179 36.3
Cfa001112 Carpinus fangiana HOM05D000123 ORTHO05D000064 3.8e-17 92.4 179 34.6
Haze_05369 Corylus avellana HOM05D000123 ORTHO05D000064 6.5e-17 91.7 179 34.1
QL05p050259 Quercus lobata HOM05D000123 ORTHO05D000064 1.1e-16 90.9 171 38.6
Sabra14G0106700 Salix brachista HOM05D000123 ORTHO05D000064 1.1e-16 90.9 178 36.5
MD17G1230100 Malus domestica HOM05D000123 ORTHO05D000064 1.9e-16 90.1 179 33.5
FAN09G1297 Fragaria x ananassa HOM05D000123 ORTHO05D000064 4.2e-16 89.0 179 33.0
Potri.014G141400 Populus trichocarpa HOM05D000123 ORTHO05D000064 5.5e-16 88.6 178 35.4
CiPaw.10G103400 Carya illinoinensis HOM05D000123 ORTHO05D000064 7.2e-16 88.2 179 34.6
Dinv32326 Davidia involucrata HOM05D000123 ORTHO05D000064 9.4e-16 87.8 179 36.3
Manes.17G060600 Manihot esculenta HOM05D000123 ORTHO05D000064 1.2e-15 87.4 181 35.9
Potri.004G062300 Populus trichocarpa HOM05D000123 ORTHO05D000064 1.2e-15 87.4 179 35.2
RcHm_v2.0_Chr2g0131371 Rosa chinensis HOM05D000123 ORTHO05D000064 2.1e-15 86.7 179 36.3
VMungo0251G2077 Vigna mungo HOM05D000123 ORTHO05D000064 2.7e-15 86.3 179 34.1
Sabra04G0041300 Salix brachista HOM05D000123 ORTHO05D000064 3.6e-15 85.9 179 35.8
MSTRG.15064 Avicennia marina HOM05D000123 ORTHO05D000064 4.7e-15 85.5 180 35.0
Sabra11G0056100 Salix brachista HOM05D000123 ORTHO05D000064 4.7e-15 85.5 179 33.0
Sabra11G0059300 Salix brachista HOM05D000123 ORTHO05D000064 4.7e-15 85.5 179 33.0
Glyma.05G162300 Glycine max HOM05D000123 ORTHO05D000064 6.1e-15 85.1 179 34.1
Os01g0749300 Oryza sativa ssp. japonica HOM05D000123 ORTHO05D000064 6.1e-15 85.1 165 37.6
Duzib192G0056 Durio zibethinus HOM05D000123 ORTHO05D000064 1.4e-14 84.0 179 36.3
Gohir.A10G033900 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.8e-14 83.6 179 35.2
Manes.01G129900 Manihot esculenta HOM05D000123 ORTHO05D000064 1.8e-14 83.6 170 36.5
Phvul.002G242000 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 1.8e-14 83.6 179 33.0
GSVIVG01020781001 Vitis vinifera HOM05D000123 ORTHO05D000064 1.8e-14 83.6 168 34.5
Zm00001eb371000 Zea mays HOM05D000123 ORTHO05D000064 1.8e-14 83.6 166 38.6
Ciclev10015472m.g Citrus clementina HOM05D000123 ORTHO05D000064 2.3e-14 83.2 180 33.3
Prupe.4G068100 Prunus persica HOM05D000123 ORTHO05D000064 2.3e-14 83.2 93 60.2
Duzib235G1095 Durio zibethinus HOM05D000123 ORTHO05D000064 3.0e-14 82.8 179 35.8
Nitab4.5_0003133g0040 Nicotiana tabacum HOM05D000123 ORTHO05D000064 3.0e-14 82.8 175 37.7
Gohir.D10G034600 Gossypium hirsutum HOM05D000123 ORTHO05D000064 3.9e-14 82.4 179 35.2
Migut.H02116 Erythranthe guttata HOM05D000123 ORTHO05D000064 5.1e-14 82.0 181 36.5
TWI09G0153 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 5.1e-14 82.0 179 34.6
MSTRG.16174 Avicennia marina HOM05D000123 ORTHO05D000064 6.7e-14 81.6 182 34.6
CSS0040228 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 8.8e-14 81.3 182 33.5
Gohir.A05G376800 Gossypium hirsutum HOM05D000123 ORTHO05D000064 8.8e-14 81.3 172 33.7
Gohir.D04G039100 Gossypium hirsutum HOM05D000123 ORTHO05D000064 8.8e-14 81.3 172 33.7
Gorai.012G044200 Gossypium raimondii HOM05D000123 ORTHO05D000064 8.8e-14 81.3 172 33.7
Glyma.08G119900 Glycine max HOM05D000123 ORTHO05D000064 1.5e-13 80.5 179 33.0
Gorai.011G036400 Gossypium raimondii HOM05D000123 ORTHO05D000064 1.5e-13 80.5 179 34.6
TPR.G6752 Trifolium pratense HOM05D000123 ORTHO05D000064 1.5e-13 80.5 181 33.7
CANSAT35G0269 Cannabis sativa HOM05D000123 ORTHO05D000064 2.0e-13 80.1 91 48.4
Cpa.g.sc124.4 Carica papaya HOM05D000123 ORTHO05D000064 2.0e-13 80.1 104 43.3
Cpa.g.sc50.58 Carica papaya HOM05D000123 ORTHO05D000064 2.0e-13 80.1 171 33.3
CiPaw.09G136500 Carya illinoinensis HOM05D000123 ORTHO05D000064 2.6e-13 79.7 168 32.1
Peaxi162Scf00154g01021 Petunia axillaris HOM05D000123 ORTHO05D000064 2.6e-13 79.7 173 35.8
TWI53G0485 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 2.6e-13 79.7 179 33.5
Thecc.06G164000 Theobroma cacao HOM05D000123 ORTHO05D000064 3.3e-13 79.3 180 33.9
Nitab4.5_0012199g0010 Nicotiana tabacum HOM05D000123 ORTHO05D000064 4.4e-13 79.0 182 32.4
Manes.16G038720 Manihot esculenta HOM05D000123 ORTHO05D000064 5.7e-13 78.6 179 33.5
THA.LOC104798435 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 5.7e-13 78.6 166 34.9
Nitab4.5_0001778g0090 Nicotiana tabacum HOM05D000123 ORTHO05D000064 7.4e-13 78.2 182 32.4
AUR62039492 Chenopodium quinoa HOM05D000123 ORTHO05D000064 9.7e-13 77.8 89 47.2
EL10Ac8g19881 Beta vulgaris HOM05D000123 ORTHO05D000064 1.7e-12 77.0 89 48.3
COL.COLO4_31214 Corchorus olitorius HOM05D000123 ORTHO05D000064 2.8e-12 76.3 181 34.3
Solyc02g072000.3 Solanum lycopersicum HOM05D000123 ORTHO05D000064 2.8e-12 76.3 179 31.3
AUR62041808 Chenopodium quinoa HOM05D000123 ORTHO05D000064 4.8e-12 75.5 89 46.1
Ca_17887_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 4.8e-12 75.5 179 33.0
Dinv12740 Davidia involucrata HOM05D000123 ORTHO05D000064 4.8e-12 75.5 177 32.2
CAN.G803.13 Capsicum annuum HOM05D000123 ORTHO05D000064 8.2e-12 74.7 171 33.9
Lalb_Chr12g0204911 Lupinus albus HOM05D000123 ORTHO05D000064 8.2e-12 74.7 179 35.2
Lalb_Chr13g0295361 Lupinus albus HOM05D000123 ORTHO05D000064 1.1e-11 74.3 181 34.3
Lj4g0010286 Lotus japonicus HOM05D000123 ORTHO05D000064 1.4e-11 73.9 179 31.8
Peaxi162Scf00112g00104 Petunia axillaris HOM05D000123 ORTHO05D000064 1.4e-11 73.9 182 31.3
Hund21451 Selenicereus undatus HOM05D000123 ORTHO05D000064 1.4e-11 73.9 89 46.1
Sopen02g020980 Solanum pennellii HOM05D000123 ORTHO05D000064 1.8e-11 73.6 180 31.7
MSTRG.6773 Avicennia marina HOM05D000123 ORTHO05D000064 2.4e-11 73.2 168 32.7
Duzib160G0076 Durio zibethinus HOM05D000123 ORTHO05D000064 4.1e-11 72.4 178 34.3
SEGI_30844 Sequoiadendron giganteum HOM05D000123 ORTHO05D000064 4.1e-11 72.4 209 31.1
TWI73G0371 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 4.1e-11 72.4 179 30.2
Nitab4.5_0005259g0020 Nicotiana tabacum HOM05D000123 ORTHO05D000064 5.3e-11 72.0 173 35.3
Medtr8g087540 Medicago truncatula HOM05D000123 ORTHO05D000064 7.0e-11 71.6 89 47.2
Atru.chr10.1528 Acer truncatum HOM05D000123 ORTHO05D000064 1.2e-10 70.9 89 43.8
ClCG03G007410 Citrullus lanatus HOM05D000123 ORTHO05D000064 1.2e-10 70.9 170 32.4
Ca_27593_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 2.0e-10 70.1 175 31.4
Glyma.13G225700 Glycine max HOM05D000123 ORTHO05D000064 2.6e-10 69.7 179 29.6
arahy.Tifrunner.gnm1.ann1.G2HH9X Arachis hypogaea HOM05D000123 ORTHO05D000064 3.5e-10 69.3 89 42.7
Phvul.006G171700 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 3.5e-10 69.3 86 43.0
THA.LOC104806169 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 3.5e-10 69.3 177 32.8
arahy.Tifrunner.gnm1.ann1.PW78BB Arachis hypogaea HOM05D000123 ORTHO05D000064 4.5e-10 68.9 89 42.7
Lalb_Chr07g0186211 Lupinus albus HOM05D000123 ORTHO05D000064 5.9e-10 68.6 178 30.9
Peaxi162Scf01009g00222 Petunia axillaris HOM05D000123 ORTHO05D000064 5.9e-10 68.6 182 31.3
Sed0011231 Sechium edule HOM05D000123 ORTHO05D000064 5.9e-10 68.6 89 46.1
Manes.02G087400 Manihot esculenta HOM05D000123 ORTHO05D000064 7.7e-10 68.2 166 33.1
Gohir.A06G199100 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.0e-09 67.8 178 28.7
Eucgr.E02813 Eucalyptus grandis HOM05D000123 ORTHO05D000064 1.3e-09 67.4 100 46.0
Psat7g067800 Pisum sativum HOM05D000123 ORTHO05D000064 1.3e-09 67.4 89 44.9
arahy.Tifrunner.gnm1.ann1.EUH4IG Arachis hypogaea HOM05D000123 ORTHO05D000064 2.2e-09 66.6 89 43.8
MD10G1274400 Malus domestica HOM05D000123 ORTHO05D000064 2.2e-09 66.6 108 38.9
CAN.G1569.3 Capsicum annuum HOM05D000123 ORTHO05D000064 2.9e-09 66.2 182 28.6
Glyma.15G086400 Glycine max HOM05D000123 ORTHO05D000064 3.8e-09 65.9 85 43.5
Gorai.010G240800 Gossypium raimondii HOM05D000123 ORTHO05D000064 3.8e-09 65.9 178 28.1
CAN.G411.34 Capsicum annuum HOM05D000123 ORTHO05D000064 5.0e-09 65.5 174 28.2
Lj6g0022642 Lotus japonicus HOM05D000123 ORTHO05D000064 5.0e-09 65.5 176 29.5
Sc05g0006810 Simmondsia chinensis HOM05D000123 ORTHO05D000064 5.0e-09 65.5 89 43.8
Gohir.D06G206400 Gossypium hirsutum HOM05D000123 ORTHO05D000064 8.5e-09 64.7 178 28.1
Sed0020583 Sechium edule HOM05D000123 ORTHO05D000064 8.5e-09 64.7 89 43.8
MD00G1007800 Malus domestica HOM05D000123 ORTHO05D000064 1.1e-08 64.3 105 39.0
Nitab4.5_0005428g0010 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.1e-08 64.3 179 31.8
SalBow7G2766 Salvia bowleyana HOM05D000123 ORTHO05D000064 1.1e-08 64.3 178 30.9
Ah.14g086930 Amaranthus hybridus HOM05D000123 ORTHO05D000064 1.5e-08 63.9 120 36.7
VMungo0540G0100 Vigna mungo HOM05D000123 ORTHO05D000064 1.5e-08 63.9 86 39.5
Zm00001eb353710 Zea mays HOM05D000123 ORTHO05D000064 1.5e-08 63.9 174 31.6
Ah.09g233200 Amaranthus hybridus HOM05D000123 ORTHO05D000064 1.9e-08 63.5 86 43.0
Nitab4.5_0002458g0040 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.9e-08 63.5 179 31.3
Aa31LG6G1560 Aethionema arabicum HOM05D000001 ORTHO05D006238 2.5e-08 63.2 96 36.5
MELO3C002679.2 Cucumis melo HOM05D000123 ORTHO05D000064 5.5e-08 62.0 89 40.4
CsaV3_1G033050 Cucumis sativus L. HOM05D000123 ORTHO05D000064 5.5e-08 62.0 89 40.4
PGSC0003DMG401027812 Solanum tuberosum HOM05D000123 ORTHO05D000064 1.2e-07 60.8 179 28.5
Migut.M00999 Erythranthe guttata HOM05D000123 ORTHO05D000064 1.6e-07 60.5 182 29.7
arahy.Tifrunner.gnm1.ann1.20C5U6 Arachis hypogaea HOM05D000123 ORTHO05D000064 2.1e-07 60.1 89 43.8
BcaB04g18504 Brassica carinata HOM05D000123 ORTHO05D000064 3.6e-07 59.3 94 38.3
Lsat_1_v5_gn_4_26761 Lactuca sativa HOM05D000123 ORTHO05D000064 4.7e-07 58.9 179 30.7
PGR031G1879 Punica granatum HOM05D000123 ORTHO05D000064 4.7e-07 58.9 172 28.5
Sp2g10600 Schrenkiella parvula HOM05D000123 ORTHO05D000064 4.7e-07 58.9 174 32.2
Sed0026078 Sechium edule HOM05D000123 ORTHO05D000064 4.7e-07 58.9 88 39.8
PGSC0003DMG400017334 Solanum tuberosum HOM05D000123 ORTHO05D000064 6.1e-07 58.5 172 32.6
Oeu039870.1 Olea europaea HOM05D000123 ORTHO05D000064 8.0e-07 58.2 180 29.4
Cc02_g15780 Coffea canephora HOM05D000123 ORTHO05D000064 1.4e-06 57.4 183 30.6
ECA234G1228 Erigeron canadensis HOM05D000123 ORTHO05D000064 1.4e-06 57.4 81 43.2
HanXRQChr17g0565381 Helianthus annuus HOM05D000123 ORTHO05D000064 1.4e-06 57.4 94 39.4
DCAR_007927 Daucus carota HOM05D000123 ORTHO05D000064 1.8e-06 57.0 89 40.4
Solyc03g006000.3 Solanum lycopersicum HOM05D000123 ORTHO05D000064 4.0e-06 55.8 86 37.2
Sopen03g002000 Solanum pennellii HOM05D000123 ORTHO05D000064 4.0e-06 55.8 86 37.2
Ciclev10015413m.g Citrus clementina HOM05D000123 ORTHO05D000064 5.2e-06 55.5 175 30.9
SGA_v2.0_scaffold1G00097 Striga asiatica HOM05D000123 ORTHO05D000064 6.7e-06 55.1 182 26.9
HPP92_006382 Vanilla planifolia HOM05D000123 ORTHO05D000064 6.7e-06 55.1 169 32.0
BcaC04g21748 Brassica carinata HOM05D000123 ORTHO05D000064 8.8e-06 54.7 175 30.3
BolC9t55672H Brassica oleracea HOM05D000123 ORTHO05D000064 8.8e-06 54.7 175 30.3
Sp7g17590 Schrenkiella parvula HOM05D000123 ORTHO05D000064 8.8e-06 54.7 92 33.7


User provided reference genes

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