Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 7.6e-173 610.5 334 100.0
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.1e-114 416.4 348 71.8
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 9.7e-112 407.5 351 68.9
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.7e-106 389.4 350 66.6
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.7e-90 336.3 345 61.4
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 6.1e-90 335.1 341 59.5
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 2.2e-79 300.1 342 57.0
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.9e-79 299.7 324 58.3
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 5.4e-78 295.4 342 56.4
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 5.6e-75 285.4 332 58.7
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.2e-74 284.3 314 58.0
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.8e-73 280.4 272 62.9
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 4.0e-73 279.3 348 55.5
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.2e-72 277.7 177 80.2
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 9.8e-72 274.6 171 81.9
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 2.9e-71 273.1 173 80.9
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 3.7e-71 272.7 176 76.7
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.7e-71 272.7 281 63.7
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 1.4e-70 270.8 349 53.6
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 1.2e-69 267.7 175 79.4
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.0e-69 266.9 342 54.1
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 7.8e-69 265.0 171 78.9
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 7.8e-69 265.0 176 77.3
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 7.8e-69 265.0 176 77.3
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.0e-68 264.6 176 76.7
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 3.0e-68 263.1 332 52.1
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 3.9e-68 262.7 330 54.2
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 3.9e-68 262.7 325 55.1
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 5.0e-68 262.3 176 75.0
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 6.6e-68 261.9 336 54.2
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 6.6e-68 261.9 326 53.7
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 8.6e-68 261.5 344 52.6
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 8.6e-68 261.5 326 54.0
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.5e-67 260.8 184 71.2
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.9e-67 260.4 349 51.3
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 2.5e-67 260.0 322 55.0
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 5.6e-67 258.8 328 56.1
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 7.3e-67 258.5 341 53.4
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 9.5e-67 258.1 171 77.2
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 3.6e-66 256.1 194 67.5
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 3.6e-66 256.1 324 52.8
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 6.2e-66 255.4 182 70.9
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 6.2e-66 255.4 345 51.0
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 1.4e-65 254.2 182 70.9
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 2.3e-65 253.4 171 73.7
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 3.1e-65 253.1 168 78.6
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 6.8e-65 251.9 345 52.2
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 8.9e-65 251.5 299 55.5
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 2.0e-64 250.4 372 48.4
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 2.6e-64 250.0 332 52.1
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 2.6e-64 250.0 176 72.2
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 3.4e-64 249.6 183 69.9
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 3.4e-64 249.6 340 51.8
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 5.8e-64 248.8 175 72.6
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 7.5e-64 248.4 172 73.3
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 9.8e-64 248.1 336 51.5
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.3e-63 247.7 321 54.5
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.7e-63 247.3 173 73.4
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 2.9e-63 246.5 183 68.3
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 2.9e-63 246.5 183 68.3
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 2.9e-63 246.5 183 68.3
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 2.9e-63 246.5 184 67.9
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 8.3e-63 245.0 176 71.0
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 1.1e-62 244.6 178 71.3
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 2.4e-62 243.4 330 52.1
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.2e-61 241.1 339 50.7
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 2.1e-61 240.4 182 70.3
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.1e-61 240.4 182 70.3
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 2.1e-61 240.4 169 73.4
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 2.7e-61 240.0 358 47.5
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 1.0e-60 238.0 171 74.9
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.3e-60 237.7 305 52.8
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 1.7e-60 237.3 322 48.8
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.3e-60 236.9 170 74.7
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 3.0e-60 236.5 176 70.5
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 8.6e-60 235.0 161 73.3
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 1.1e-59 234.6 173 71.1
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.9e-59 233.8 367 48.8
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 5.6e-59 232.3 180 68.3
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 7.3e-59 231.9 171 74.9
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 7.3e-59 231.9 169 72.2
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 1.6e-58 230.7 169 73.4
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 1.8e-57 227.3 159 76.7
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.1e-57 226.5 170 70.6
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 4.0e-57 226.1 173 69.9
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 8.9e-57 224.9 309 51.8
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 2.0e-56 223.8 160 70.6
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 2.0e-56 223.8 178 68.0
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 1.1e-54 218.0 171 66.1
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 4.6e-53 212.6 185 62.7
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 7.8e-53 211.8 157 72.6
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 5.1e-52 209.1 172 65.1
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 8.1e-50 201.8 280 52.5
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 8.1e-50 201.8 171 62.0
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 4.0e-49 199.5 172 61.6
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 8.9e-49 198.4 176 60.8
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 1.7e-47 194.1 178 59.6
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 2.9e-47 193.4 225 53.3
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 5.4e-46 189.1 122 77.9
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 7.8e-45 185.3 182 58.2
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.8e-42 176.8 138 69.6
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.8e-42 176.8 138 69.6
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 2.8e-42 176.8 279 45.9
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 6.2e-42 175.6 124 70.2
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 3.5e-37 159.8 104 77.9
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 3.0e-36 156.8 124 66.1
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 3.3e-35 153.3 119 68.9
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 1.8e-33 147.5 253 47.8
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 6.7e-28 129.0 108 65.7
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 2.5e-27 127.1 180 41.1
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 9.0e-25 118.6 171 38.6
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 1.9e-22 110.9 70 80.0
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 3.2e-22 110.2 106 59.4
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 3.0e-20 103.6 64 82.8
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 6.3e-18 95.9 198 47.5
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 2.0e-16 90.9 73 68.5
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.6e-13 81.3 107 48.6
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.0e-12 77.0 40 92.5
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 3.0e-12 77.0 61 62.3
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 8.7e-12 75.5 44 84.1
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 1.1e-11 75.1 79 55.7
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 2.5e-11 73.9 42 85.7
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 3.3e-11 73.6 190 35.8
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.3e-10 71.6 42 83.3
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 4.5e-08 63.2 50 62.0
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 7.7e-08 62.4 76 52.6


User provided reference genes

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