Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.2e-143 512.3 260 100.0
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 7.4e-83 311.2 190 86.3
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.9e-79 298.5 175 85.1
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 5.5e-78 295.0 175 84.6
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 7.1e-78 294.7 176 84.1
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 9.3e-78 294.3 176 83.0
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.6e-77 293.5 176 84.1
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 2.7e-77 292.7 178 84.8
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 3.5e-77 292.4 175 85.1
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.5e-77 292.4 175 85.7
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 3.5e-77 292.4 176 84.7
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.8e-76 290.0 176 82.4
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 5.1e-76 288.5 175 84.0
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 6.7e-76 288.1 176 85.8
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 8.7e-76 287.7 169 85.2
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.5e-75 287.0 175 84.6
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 4.3e-75 285.4 184 78.8
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.6e-74 283.5 176 83.5
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.6e-74 283.5 179 82.7
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.6e-74 283.5 175 81.7
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.6e-74 283.5 175 81.7
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 3.7e-74 282.3 163 85.3
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 8.2e-74 281.2 175 82.3
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.1e-73 280.8 180 81.1
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.1e-73 280.8 174 82.8
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.4e-73 280.4 185 77.3
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.8e-73 280.0 189 77.2
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.8e-73 280.0 189 77.2
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.8e-73 280.0 176 82.4
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 3.1e-73 279.3 175 81.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.1e-73 279.3 175 82.3
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.1e-73 278.9 178 80.9
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 4.1e-73 278.9 175 81.7
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 6.9e-73 278.1 170 81.8
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.9e-73 278.1 175 81.7
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 6.9e-73 278.1 183 79.2
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 9.0e-73 277.7 170 81.8
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 9.0e-73 277.7 170 81.8
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.5e-72 276.9 180 78.9
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 2.0e-72 276.6 177 78.5
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 2.6e-72 276.2 181 78.5
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.4e-72 275.8 183 78.7
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 3.4e-72 275.8 174 79.9
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 5.9e-72 275.0 170 81.2
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.0e-71 274.2 171 81.3
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 1.0e-71 274.2 174 83.9
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.0e-71 274.2 183 78.1
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.0e-71 274.2 183 78.1
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-71 273.5 175 77.1
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.9e-71 272.7 175 80.0
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 3.8e-71 272.3 179 81.0
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 5.0e-71 271.9 176 78.4
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 5.0e-71 271.9 183 77.6
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.1e-70 270.8 173 82.7
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.1e-70 270.8 173 79.8
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.5e-70 269.6 175 77.7
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.5e-70 269.6 177 78.0
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.5e-70 269.6 177 81.4
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 4.2e-70 268.9 172 82.6
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 7.2e-70 268.1 173 78.6
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 9.3e-70 267.7 183 75.4
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.3e-70 267.7 175 76.6
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.2e-69 267.3 176 80.7
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.1e-69 266.5 175 77.7
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.1e-69 266.5 173 79.2
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 3.6e-69 265.8 177 78.0
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 4.6e-69 265.4 175 76.0
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 6.1e-69 265.0 186 75.8
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.8e-68 263.5 191 71.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 3.0e-68 262.7 181 74.6
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 6.7e-68 261.5 174 80.5
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 8.7e-68 261.2 173 75.7
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 8.7e-68 261.2 172 79.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.5e-67 260.4 175 76.0
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.9e-67 260.0 178 76.4
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 4.3e-67 258.8 178 74.2
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 4.3e-67 258.8 178 74.2
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 7.4e-67 258.1 174 73.6
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 7.4e-67 258.1 178 73.6
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 9.7e-67 257.7 178 73.6
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 9.7e-67 257.7 178 73.6
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 9.7e-67 257.7 178 75.3
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 3.7e-66 255.8 179 74.9
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 3.7e-66 255.8 179 74.9
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 4.8e-66 255.4 177 72.3
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 6.3e-66 255.0 177 72.3
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 8.2e-66 254.6 176 73.3
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 8.2e-66 254.6 181 72.9
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 8.2e-66 254.6 177 75.7
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.1e-65 252.7 174 75.3
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 6.9e-65 251.5 179 73.2
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 9.1e-65 251.1 184 70.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.2e-64 250.8 176 72.7
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.5e-64 250.4 185 69.7
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.5e-64 250.4 177 70.6
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 3.4e-64 249.2 183 74.3
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.5e-64 248.8 176 73.3
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.5e-64 248.8 176 73.3
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.9e-64 248.4 173 74.6
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.9e-64 248.4 172 73.3
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 5.0e-63 245.4 182 71.4
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 6.5e-63 245.0 176 72.2
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 9.4e-62 241.1 171 76.0
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.2e-61 240.7 181 70.7
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.2e-61 240.7 176 70.5
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.6e-61 240.4 176 71.0
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 2.1e-61 240.0 179 70.4
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.7e-61 239.6 179 71.5
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.6e-61 239.2 176 69.9
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 4.6e-61 238.8 183 72.1
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.6e-61 238.8 173 73.4
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 1.0e-60 237.7 171 74.3
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.4e-60 237.3 176 72.2
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 5.1e-60 235.3 179 73.2
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 6.7e-60 235.0 175 70.9
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 8.8e-60 234.6 173 68.2
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 8.8e-60 234.6 182 69.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.0e-59 233.4 179 69.3
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.3e-59 232.6 178 69.1
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 4.4e-59 232.3 176 68.2
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 7.4e-59 231.5 192 68.8
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 9.7e-59 231.1 173 68.2
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.1e-57 227.6 149 75.2
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.8e-57 226.9 178 68.0
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 4.1e-57 225.7 152 75.7
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 4.5e-56 222.2 158 72.8
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 4.5e-56 222.2 172 67.4
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 7.7e-56 221.5 251 51.8
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 5.0e-55 218.8 155 76.8
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 9.4e-54 214.5 181 66.3
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.6e-51 206.5 182 64.3
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 3.1e-49 199.5 119 80.7
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.6e-48 196.4 179 57.0
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 5.5e-46 188.7 193 58.5
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 9.4e-46 188.0 191 59.7
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 1.2e-45 187.6 139 62.6
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 4.7e-45 185.7 175 56.6
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 2.3e-44 183.3 146 61.6
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 8.8e-44 181.4 182 53.3
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.9e-38 163.7 117 73.5
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.2e-35 154.5 173 49.7
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 2.0e-35 153.7 129 62.8
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.8e-34 149.8 87 79.3
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.7e-34 149.4 180 48.3
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.9e-32 142.1 84 78.6
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.9e-32 142.1 85 76.5
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.3e-31 140.2 145 55.2
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 5.5e-30 135.6 112 64.3
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 5.5e-30 135.6 89 74.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.4e-28 131.0 129 57.4
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.5e-24 116.3 84 70.2
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 5.9e-24 115.5 89 67.4
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.3e-23 113.6 128 48.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 3.8e-23 112.8 116 55.2
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 3.8e-23 112.8 116 55.2
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 7.3e-22 108.6 122 43.4
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 4.7e-21 105.9 105 46.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.4e-19 99.4 146 39.0
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.6e-13 79.7 44 79.5
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 4.7e-13 79.3 65 63.1
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 3.4e-11 73.2 80 48.8
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 7.5e-11 72.0 89 39.3
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.2e-10 70.5 79 54.4
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 2.9e-10 70.1 87 47.1
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.1e-08 63.9 188 31.9
MBI13_g11352_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.0e-07 61.6 49 63.3


User provided reference genes

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