Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0001 Trochodendron aralioides HOM05D005834 ORTHO05D006988 6.3e-114 414.1 202 100.0
TAR375G0511 Trochodendron aralioides HOM05D005834 ORTHO05D006988 9.3e-41 171.0 132 72.7
Cfa012181 Carpinus fangiana HOM05D005834 ORTHO05D006988 2.1e-37 159.8 143 60.8
Haze_08837 Corylus avellana HOM05D005834 ORTHO05D006988 4.8e-37 158.7 131 64.1
Oeu009159.1 Olea europaea HOM05D005834 ORTHO05D006988 2.4e-36 156.4 151 58.9
Gohir.D13G091400 Gossypium hirsutum HOM05D005834 ORTHO05D006988 4.0e-36 155.6 133 63.2
CDE06G2119 Ceratophyllum demersum HOM05D005834 ORTHO05D006988 5.3e-36 155.2 136 60.3
Gorai.010G138500 Gossypium raimondii HOM05D005834 ORTHO05D006988 5.3e-36 155.2 133 62.4
ClCG07G008060 Citrullus lanatus HOM05D005834 ORTHO05D006988 6.9e-36 154.8 131 63.4
Duzib177G0139 Durio zibethinus HOM05D005834 ORTHO05D006988 1.2e-35 154.1 133 62.4
MELO3C016351.2 Cucumis melo HOM05D005834 ORTHO05D006988 1.5e-35 153.7 131 62.6
GSVIVG01019756001 Vitis vinifera HOM05D005834 ORTHO05D006988 1.5e-35 153.7 127 64.6
Gohir.A13G086435 Gossypium hirsutum HOM05D005834 ORTHO05D006988 2.6e-35 152.9 133 62.4
Nitab4.5_0001615g0160 Nicotiana tabacum HOM05D005834 ORTHO05D006988 2.6e-35 152.9 149 57.0
Nitab4.5_0003441g0100 Nicotiana tabacum HOM05D005834 ORTHO05D006988 2.6e-35 152.9 149 57.0
MBI17_g24636_MAGBIO Magnolia biondii HOM05D005834 ORTHO05D006988 3.4e-35 152.5 131 64.1
Sopen08g029350 Solanum pennellii HOM05D005834 ORTHO05D006988 3.4e-35 152.5 150 57.3
Nn4g22244 Nelumbo nucifera HOM05D005834 ORTHO05D006988 4.4e-35 152.1 129 64.3
Sc07g0009750 Simmondsia chinensis HOM05D005834 ORTHO05D006988 4.4e-35 152.1 144 60.4
COL.COLO4_32077 Corchorus olitorius HOM05D005834 ORTHO05D006988 5.8e-35 151.8 133 62.4
CsaV3_4G005990 Cucumis sativus L. HOM05D005834 ORTHO05D006988 5.8e-35 151.8 136 61.8
Ciclev10020600m.g Citrus clementina HOM05D005834 ORTHO05D006988 7.6e-35 151.4 131 62.6
Solyc08g081030.1 Solanum lycopersicum HOM05D005834 ORTHO05D006988 9.9e-35 151.0 149 57.0
PGSC0003DMG400012209 Solanum tuberosum HOM05D005834 ORTHO05D006988 9.9e-35 151.0 149 56.4
Manes.01G061600 Manihot esculenta HOM05D005834 ORTHO05D006988 1.3e-34 150.6 127 62.2
PSO478G3323 Papaver somniferum HOM05D005834 ORTHO05D006988 1.7e-34 150.2 127 61.4
PSO782G5606 Papaver somniferum HOM05D005834 ORTHO05D006988 1.7e-34 150.2 127 61.4
Thecc.05G185300 Theobroma cacao HOM05D005834 ORTHO05D006988 2.2e-34 149.8 122 63.9
CAN.G774.32 Capsicum annuum HOM05D005834 ORTHO05D006988 2.9e-34 149.4 149 56.4
CiPaw.12G093400 Carya illinoinensis HOM05D005834 ORTHO05D006988 3.8e-34 149.1 124 63.7
PGR031G2799 Punica granatum HOM05D005834 ORTHO05D006988 3.8e-34 149.1 127 63.0
TWI36G1302 Tripterygium wilfordii HOM05D005834 ORTHO05D006988 3.8e-34 149.1 153 54.9
TWI75G1392 Tripterygium wilfordii HOM05D005834 ORTHO05D006988 6.4e-34 148.3 153 54.2
Sed0023719 Sechium edule HOM05D005834 ORTHO05D006988 8.4e-34 147.9 150 56.0
MSTRG.11988 Avicennia marina HOM05D005834 ORTHO05D006988 1.1e-33 147.5 134 61.9
Eucgr.D01849 Eucalyptus grandis HOM05D005834 ORTHO05D006988 1.1e-33 147.5 126 62.7
TWI18G1384 Tripterygium wilfordii HOM05D005834 ORTHO05D006988 1.4e-33 147.1 153 54.2
CDE02G2404 Ceratophyllum demersum HOM05D005834 ORTHO05D006988 1.9e-33 146.7 125 61.6
Hma1.2p1_0896F.1_g233990 Hydrangea macrophylla HOM05D005834 ORTHO05D006988 1.9e-33 146.7 150 58.7
Phvul.002G289300 Phaseolus vulgaris HOM05D005834 ORTHO05D006988 1.9e-33 146.7 145 58.6
Cpa.g.sc74.45 Carica papaya HOM05D005834 ORTHO05D006988 2.4e-33 146.4 127 63.0
QL12p033151 Quercus lobata HOM05D005834 ORTHO05D006988 3.2e-33 146.0 126 61.9
Nn1g01500 Nelumbo nucifera HOM05D005834 ORTHO05D006988 4.2e-33 145.6 119 67.2
Psat7g033440 Pisum sativum HOM05D005834 ORTHO05D006988 5.4e-33 145.2 127 61.4
Atru.chr9.2193 Acer truncatum HOM05D005834 ORTHO05D006988 7.1e-33 144.8 138 58.0
Glyma.05G207700 Glycine max HOM05D005834 ORTHO05D006988 7.1e-33 144.8 147 57.8
THA.LOC104806390 Tarenaya hassleriana HOM05D005834 ORTHO05D006988 7.1e-33 144.8 129 60.5
Aa31LG9G10740 Aethionema arabicum HOM05D005834 ORTHO05D006988 9.3e-33 144.4 144 53.5
THA.LOC104814486 Tarenaya hassleriana HOM05D005834 ORTHO05D006988 1.2e-32 144.1 129 58.9
VMungo0251G2142 Vigna mungo HOM05D005834 ORTHO05D006988 1.2e-32 144.1 145 57.9
Sabra03G0090100 Salix brachista HOM05D005834 ORTHO05D006988 1.6e-32 143.7 127 59.1
Prupe.5G099800 Prunus persica HOM05D005834 ORTHO05D006988 2.1e-32 143.3 134 60.4
Actinidia02009 Actinidia chinensis HOM05D005834 ORTHO05D006988 4.6e-32 142.1 127 60.6
HanXRQChr07g0189831 Helianthus annuus HOM05D005834 ORTHO05D006988 6.0e-32 141.7 134 61.9
EL10Ac2g03742 Beta vulgaris HOM05D005834 ORTHO05D006988 7.8e-32 141.4 138 58.7
Lalb_Chr16g0389961 Lupinus albus HOM05D005834 ORTHO05D006988 1.0e-31 141.0 149 56.4
Potri.003G127100 Populus trichocarpa HOM05D005834 ORTHO05D006988 1.3e-31 140.6 127 59.1
Lj4g0028153 Lotus japonicus HOM05D005834 ORTHO05D006988 2.3e-31 139.8 143 56.6
MSTRG.13838 Avicennia marina HOM05D005834 ORTHO05D006988 3.0e-31 139.4 132 58.3
Peaxi162Scf00119g00811 Petunia axillaris HOM05D005834 ORTHO05D006988 3.0e-31 139.4 139 55.4
Migut.A00768 Erythranthe guttata HOM05D005834 ORTHO05D006988 6.6e-31 138.3 142 56.3
Glyma.08G014400 Glycine max HOM05D005834 ORTHO05D006988 6.6e-31 138.3 140 57.9
CSS0012089 Camellia sinensis var. sinensis HOM05D005834 ORTHO05D006988 8.7e-31 137.9 152 55.3
ATR0680G079 Amborella trichopoda HOM05D005834 ORTHO05D006988 1.1e-30 137.5 130 58.5
RcHm_v2.0_Chr7g0197751 Rosa chinensis HOM05D005834 ORTHO05D006988 1.1e-30 137.5 127 59.1
Thecc.03G278300 Theobroma cacao HOM05D005834 ORTHO05D006988 1.1e-30 137.5 123 60.2
DCAR_004636 Daucus carota HOM05D005834 ORTHO05D006988 1.5e-30 137.1 157 51.6
ECA233G4696 Erigeron canadensis HOM05D005834 ORTHO05D006988 1.5e-30 137.1 131 59.5
DCAR_000612 Daucus carota HOM05D005834 ORTHO05D006988 1.9e-30 136.7 144 53.5
Gohir.D03G151600 Gossypium hirsutum HOM05D005834 ORTHO05D006988 1.9e-30 136.7 144 55.6
Rhsim02G0230300 Rhododendron simsii HOM05D005834 ORTHO05D006988 1.9e-30 136.7 140 56.4
Ah.12g056950 Amaranthus hybridus HOM05D005834 ORTHO05D006988 2.5e-30 136.3 134 59.0
Mapoly0065s0072 Marchantia polymorpha HOM05D005834 ORTHO05D006988 2.5e-30 136.3 148 50.0
Sed0011688 Sechium edule HOM05D005834 ORTHO05D006988 2.5e-30 136.3 121 58.7
TPR.G12835 Trifolium pratense HOM05D005834 ORTHO05D006988 3.3e-30 136.0 120 63.3
Gorai.003G159000 Gossypium raimondii HOM05D005834 ORTHO05D006988 5.6e-30 135.2 146 54.8
Lsat_1_v5_gn_3_7240 Lactuca sativa HOM05D005834 ORTHO05D006988 5.6e-30 135.2 127 62.2
Potri.001G104366 Populus trichocarpa HOM05D005834 ORTHO05D006988 7.3e-30 134.8 119 60.5
Zm00001eb095930 Zea mays HOM05D005834 ORTHO05D006988 7.3e-30 134.8 132 58.3
Pp3c7_14950 Physcomitrium patens HOM05D005834 ORTHO05D006988 1.3e-29 134.0 127 55.9
MD06G1082600 Malus domestica HOM05D005834 ORTHO05D006988 1.6e-29 133.7 119 63.9
AUR62010675 Chenopodium quinoa HOM05D005834 ORTHO05D006988 2.8e-29 132.9 145 54.5
Gohir.A03G016300 Gossypium hirsutum HOM05D005834 ORTHO05D006988 2.8e-29 132.9 144 54.2
Cc08_g14700 Coffea canephora HOM05D005834 ORTHO05D006988 3.6e-29 132.5 121 62.8
Dinv37643 Davidia involucrata HOM05D003133 ORTHO05D003642 3.6e-29 132.5 122 62.3
LjContig00312_ERROPOS870357g0017459 Lotus japonicus HOM05D005834 ORTHO05D006988 3.6e-29 132.5 143 54.5
AUR62017208 Chenopodium quinoa HOM05D005834 ORTHO05D006988 4.8e-29 132.1 145 54.5
Rhsim07G0091000 Rhododendron simsii HOM05D005834 ORTHO05D006988 4.8e-29 132.1 120 60.8
Ca_17535_v3 Cicer arietinum L. HOM05D005834 ORTHO05D006988 6.2e-29 131.7 127 57.5
unitig_37.g12246 Utricularia gibba HOM05D005834 ORTHO05D006988 6.2e-29 131.7 126 59.5
Lj2P192T25 Lonicera japonica HOM05D005834 ORTHO05D006988 8.1e-29 131.3 139 56.1
CARHR254840 Cardamine hirsuta HOM05D005834 ORTHO05D006988 1.1e-28 131.0 127 55.9
FAN04G1531 Fragaria x ananassa HOM05D005834 ORTHO05D006988 1.1e-28 131.0 121 59.5
FAN08G1668 Fragaria x ananassa HOM05D005834 ORTHO05D006988 1.1e-28 131.0 121 59.5
FAN13G2029 Fragaria x ananassa HOM05D005834 ORTHO05D006988 1.1e-28 131.0 121 59.5
FAN18G3242 Fragaria x ananassa HOM05D005834 ORTHO05D006988 1.1e-28 131.0 121 59.5
SEGI_14169 Sequoiadendron giganteum HOM05D005834 ORTHO05D006988 1.1e-28 131.0 119 58.0
SGA_v2.0_scaffold173G39193 Striga asiatica HOM05D003133 ORTHO05D003642 1.1e-28 131.0 129 58.9
FvH4_5g02360 Fragaria vesca HOM05D005834 ORTHO05D006988 1.4e-28 130.6 137 54.7
COL.COLO4_34459 Corchorus olitorius HOM05D005834 ORTHO05D006988 1.8e-28 130.2 148 53.4
Duzib205G0609 Durio zibethinus HOM05D005834 ORTHO05D006988 2.4e-28 129.8 119 60.5
Pp3c11_16210 Physcomitrium patens HOM05D005834 ORTHO05D006988 2.4e-28 129.8 124 55.6
Os09g0569100 Oryza sativa ssp. japonica HOM05D005834 ORTHO05D006988 3.1e-28 129.4 120 60.0
C09p34910 Brassica napus HOM05D005834 ORTHO05D006988 4.0e-28 129.0 127 55.9
Thhalv10028735m.g Eutrema salsugineum HOM05D005834 ORTHO05D006988 4.0e-28 129.0 127 56.7
HPP92_025728 Vanilla planifolia HOM05D005834 ORTHO05D006988 4.0e-28 129.0 126 55.6
HPP92_025732 Vanilla planifolia HOM05D005834 ORTHO05D006988 4.0e-28 129.0 126 55.6
BcaC04g21152 Brassica carinata HOM05D005834 ORTHO05D006988 5.3e-28 128.6 127 55.1
A09p27600 Brassica napus HOM05D005834 ORTHO05D006988 5.3e-28 128.6 127 55.1
BolC9t56337H Brassica oleracea HOM05D005834 ORTHO05D006988 5.3e-28 128.6 127 55.1
BraA09t38326Z Brassica rapa HOM05D005834 ORTHO05D006988 5.3e-28 128.6 127 55.1
BcaB01g01659 Brassica carinata HOM05D005834 ORTHO05D006988 6.9e-28 128.3 127 55.1
Medtr8g098300 Medicago truncatula HOM05D005834 ORTHO05D006988 6.9e-28 128.3 119 59.7
AL6G46090 Arabidopsis lyrata HOM05D005834 ORTHO05D006988 1.5e-27 127.1 127 53.5
AT4G11570 Arabidopsis thaliana HOM05D005834 ORTHO05D006988 2.0e-27 126.7 127 53.5
Carub.0006s3062 Capsella rubella HOM05D005834 ORTHO05D006988 2.0e-27 126.7 129 52.7
Sp6g05910 Schrenkiella parvula HOM05D005834 ORTHO05D006988 2.0e-27 126.7 127 55.9
SMO118G0327 Selaginella moellendorffii HOM05D005834 ORTHO05D006988 5.8e-27 125.2 127 53.5
Lsat_1_v5_gn_6_6461 Lactuca sativa HOM05D005834 ORTHO05D006988 2.1e-24 116.7 110 60.0
Nn6g33456 Nelumbo nucifera HOM05D005834 ORTHO05D006988 6.7e-23 111.7 96 64.6
Migut.E01092 Erythranthe guttata HOM05D005834 ORTHO05D006988 1.1e-22 110.9 126 49.2
MD14G1104100 Malus domestica HOM05D005834 ORTHO05D006988 1.5e-22 110.5 109 57.8
Hma1.2p1_1413F.1_g281840 Hydrangea macrophylla HOM05D005834 ORTHO05D006988 9.3e-17 91.3 111 52.3
Zm00001eb429350 Zea mays HOM05D005834 ORTHO05D006988 1.6e-13 80.5 120 39.2
Hma1.2p1_2711F.1_g327310 Hydrangea macrophylla HOM05D005834 ORTHO05D006988 2.1e-13 80.1 56 67.9
Os04g0557000 Oryza sativa ssp. japonica HOM05D005834 ORTHO05D006988 3.7e-13 79.3 118 39.0
PRCOL_00005827 Prasinoderma coloniale HOM05D005834 ORTHO05D006988 3.7e-13 79.3 128 39.1
unitig_46.g18553 Utricularia gibba HOM05D005834 ORTHO05D006988 1.5e-11 73.9 90 54.4
CBR_g58790 Chara braunii HOM05D005834 ORTHO05D006988 1.7e-10 70.5 126 38.9
Hma1.2p1_1695F.1_g298040 Hydrangea macrophylla HOM05D005834 ORTHO05D006988 1.5e-06 57.4 61 60.7


User provided reference genes

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