Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.9e-183 644.4 345 100.0
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.5e-149 531.9 341 84.2
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 3.9e-148 528.5 345 82.6
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.6e-146 523.1 345 80.9
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.6e-146 521.9 345 81.7
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.1e-145 518.8 345 80.9
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 5.3e-145 518.1 345 81.2
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.2e-144 516.9 345 79.7
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 2.6e-144 515.8 344 80.2
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.3e-143 513.5 335 80.9
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.2e-143 512.7 345 78.8
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 3.8e-143 511.9 345 78.3
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 2.4e-142 509.2 346 80.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 7.1e-142 507.7 345 77.1
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 2.7e-141 505.8 335 79.4
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.0e-141 504.6 337 78.3
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 7.9e-141 504.2 345 77.4
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.0e-140 503.8 345 77.1
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.3e-140 502.7 345 76.8
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.3e-140 502.7 345 77.4
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.5e-139 499.2 345 76.2
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 3.3e-139 498.8 345 77.4
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 5.6e-139 498.0 345 76.5
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 5.6e-139 498.0 345 76.5
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.8e-138 495.7 345 77.4
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 4.8e-138 495.0 347 78.7
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.8e-138 495.0 345 75.9
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.2e-138 494.6 345 75.9
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 8.1e-138 494.2 345 75.7
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 8.1e-138 494.2 345 75.9
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.4e-137 493.4 345 75.4
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 4.0e-137 491.9 345 75.9
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 4.0e-137 491.9 345 74.8
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.5e-136 490.0 345 77.1
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.0e-136 489.6 345 76.5
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.3e-135 486.9 345 74.5
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.7e-135 486.5 335 77.6
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 4.2e-134 481.9 345 75.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 4.2e-134 481.9 343 77.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 5.5e-134 481.5 345 73.3
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.6e-133 479.9 343 76.7
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.6e-133 478.4 345 73.6
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.0e-132 477.2 372 71.8
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.3e-132 476.9 345 73.6
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.0e-132 475.7 319 80.6
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 3.9e-132 475.3 337 76.0
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.3e-131 472.2 315 77.8
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 4.3e-131 471.9 345 75.1
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 9.6e-131 470.7 345 72.5
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.1e-130 469.5 345 72.2
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.7e-130 468.8 345 72.5
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 6.3e-130 468.0 345 71.6
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 3.1e-129 465.7 345 72.2
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 5.3e-129 464.9 345 71.9
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 9.0e-129 464.2 345 71.6
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 7.6e-128 461.1 344 73.5
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.2e-127 459.5 345 73.9
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 4.2e-126 455.3 345 71.3
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 9.3e-126 454.1 344 73.0
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 3.6e-125 452.2 345 69.3
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 7.9e-125 451.1 345 71.9
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.0e-124 450.7 345 71.9
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.3e-124 450.3 340 72.9
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 3.0e-124 449.1 345 71.0
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.3e-123 445.7 345 70.4
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 5.7e-123 444.9 345 69.0
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.2e-122 443.0 345 70.1
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.8e-121 439.9 289 78.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.4e-121 439.5 341 69.2
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.6e-120 436.0 331 71.9
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-119 433.7 345 70.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 3.2e-118 429.1 319 73.4
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.2e-118 428.7 345 69.6
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.9e-117 424.5 345 68.7
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.4e-116 423.7 346 67.1
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 2.0e-115 419.9 394 61.9
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.7e-114 415.6 345 67.8
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 3.7e-114 415.6 345 67.0
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.8e-113 413.3 345 68.1
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 3.1e-113 412.5 345 65.8
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.0e-112 409.8 345 67.8
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 2.6e-112 409.5 328 69.5
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 2.6e-112 409.5 345 65.8
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-111 407.1 345 67.8
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.6e-109 400.2 346 65.6
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 3.6e-109 399.1 337 65.6
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.7e-108 394.8 345 64.6
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.7e-108 394.8 345 64.6
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 9.7e-107 391.0 326 65.3
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-105 387.5 287 72.1
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 5.3e-105 385.2 294 70.4
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.2e-104 384.0 345 61.7
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 2.0e-104 383.3 373 60.9
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 7.7e-104 381.3 345 64.9
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.0e-103 380.9 338 62.7
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.0e-103 380.9 344 64.0
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.2e-103 379.8 347 60.2
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 3.8e-103 379.0 345 61.4
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 7.2e-102 374.8 324 63.3
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.0e-100 370.9 345 59.4
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.8e-100 370.2 261 73.6
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.5e-99 367.1 345 61.2
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.6e-99 366.3 345 59.4
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 4.4e-99 365.5 371 58.8
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 6.3e-98 361.7 340 63.8
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 6.3e-98 361.7 345 59.7
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.8e-97 360.1 319 64.3
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.7e-96 356.3 345 60.6
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.1e-93 346.7 348 55.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.0e-92 344.4 326 58.0
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.7e-91 338.6 350 54.9
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.7e-90 335.9 343 56.9
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.1e-89 334.3 343 56.6
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.4e-89 334.0 349 54.4
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 7.7e-88 328.2 348 54.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.0e-87 327.8 293 62.5
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.5e-86 323.9 346 54.6
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.2e-85 320.9 345 55.9
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.0e-84 317.8 347 54.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 6.8e-84 315.1 346 53.5
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 6.8e-84 315.1 346 53.5
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.0e-83 313.5 350 52.9
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 2.0e-83 313.5 346 53.2
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 3.4e-83 312.8 348 53.4
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.7e-82 310.5 348 53.2
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.2e-82 310.1 341 53.7
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.8e-81 307.0 315 58.4
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.2e-80 304.3 346 52.3
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.7e-77 292.4 345 49.9
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.4e-76 290.8 346 50.6
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 8.9e-76 288.1 346 50.6
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.7e-75 285.4 343 52.2
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.7e-74 283.9 303 56.8
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 6.4e-74 282.0 325 50.5
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.1e-73 281.2 318 51.9
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.8e-73 280.4 344 51.2
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 4.1e-73 279.3 341 49.6
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 9.2e-73 278.1 263 59.3
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 2.7e-72 276.6 345 49.6
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 2.3e-71 273.5 343 50.7
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.3e-70 269.6 341 48.7
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.2e-69 267.7 339 47.2
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-67 261.2 285 56.5
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.4e-67 259.2 289 51.6
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.9e-66 256.5 284 55.3
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 4.9e-66 255.8 350 43.1
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.9e-65 253.8 296 53.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.4e-65 253.4 303 53.1
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.6e-64 250.8 224 64.3
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 1.1e-62 244.6 356 46.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.2e-61 241.1 354 45.5
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.8e-60 237.3 322 45.3
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 5.2e-60 235.7 343 41.4
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 7.5e-59 231.9 293 47.8
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 2.1e-56 223.8 294 45.9
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 5.1e-55 219.2 138 87.7
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.9e-46 190.7 285 44.6
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.4e-44 184.5 231 51.1
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.8e-44 184.1 185 50.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.9e-42 176.8 152 67.1
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 6.4e-42 175.6 228 49.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.4e-41 172.6 304 41.1
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.1e-41 172.2 158 63.3
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.5e-35 154.5 321 37.4
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.6e-32 142.9 321 36.1
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 9.0e-28 128.6 289 37.0
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 5.8e-27 125.9 145 55.9
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 4.2e-25 119.8 281 34.5
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 4.2e-25 119.8 281 34.5
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.2e-16 91.7 111 53.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.5e-14 84.7 55 80.0
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.9e-14 84.3 50 88.0
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.3e-14 83.6 289 31.1
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 2.2e-13 80.9 111 48.6
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 8.8e-07 58.9 109 41.3
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.1e-06 58.5 115 41.7


User provided reference genes

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