Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0798 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.5e-49 198.0 99 100.0
TAR362G1088 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.0e-33 145.6 97 75.3
TAR375G1128 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.8e-32 141.4 97 71.1
TAR633G1156 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.6e-32 140.6 97 71.1
TAR376G0246 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.3e-31 138.3 97 71.1
TAR633G2694 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.6e-30 134.8 97 69.1
TAR472G0003 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.7e-30 134.4 97 71.1
TAR374G1143 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.4e-26 122.1 96 70.8
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.7e-17 92.0 97 50.5
TAR624G1439 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.9e-15 85.9 97 44.3
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.5e-15 85.5 96 49.0
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.3e-15 85.1 96 49.0
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 3.3e-15 85.1 97 43.3
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.6e-15 84.3 97 43.3
TAR365G0205 Trochodendron aralioides HOM05D000141 ORTHO05D000385 5.6e-15 84.3 97 43.3
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.6e-15 84.3 97 43.3
TAR633G1500 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.3e-15 84.0 97 43.3
TAR375G0312 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.2e-14 83.2 97 42.3
TAR625G0459 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.6e-14 82.8 97 42.3
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 4.7e-14 81.3 96 45.8
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.7e-14 81.3 98 45.9
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.2e-14 80.9 97 40.2
TAR628G0437 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.2e-14 80.9 93 41.9
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.1e-13 80.1 97 41.2
TAR369G0592 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.3e-13 79.0 97 40.2
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.0e-13 78.2 96 43.8
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 5.2e-13 77.8 96 45.8
MBI01_g25649_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.8e-13 77.4 97 40.2
TAR383G0938 Trochodendron aralioides HOM05D009698 ORTHO05D000385 6.8e-13 77.4 96 40.6
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 8.9e-13 77.0 97 42.3
TAR369G0469 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.9e-13 77.0 98 42.9
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 1.5e-12 76.3 97 43.3
TAR636G2298 Trochodendron aralioides HOM05D009698 ORTHO05D000385 1.5e-12 76.3 97 43.3
MBI15_g14066_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.6e-12 75.5 94 41.5
MBI06_g41780_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.4e-12 75.1 94 45.7
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 3.4e-12 75.1 97 44.3
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 4.4e-12 74.7 97 47.4
TAR626G1251 Trochodendron aralioides HOM05D009698 ORTHO05D000385 4.4e-12 74.7 96 41.7
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 7.5e-12 73.9 94 43.6
MBI10_g17725_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.5e-12 73.9 97 45.4
TAR040G0004 Trochodendron aralioides HOM05D009698 ORTHO05D015199 7.5e-12 73.9 71 49.3
CSS0036507 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 9.9e-12 73.6 77 46.8
TAR623G0274 Trochodendron aralioides HOM05D001309 ORTHO05D030706 1.3e-11 73.2 76 52.6
MBI02_g35833_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.7e-11 72.8 75 48.0
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 2.2e-11 72.4 101 42.6
TAR374G1072 Trochodendron aralioides HOM05D001201 ORTHO05D001100 2.2e-11 72.4 80 43.8
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-11 72.0 76 47.4
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-11 72.0 76 47.4
Dinv04435 Davidia involucrata HOM05D001309 ORTHO05D013539 2.9e-11 72.0 96 42.7
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.7e-11 71.6 76 47.4
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.7e-11 71.6 76 47.4
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.7e-11 71.6 76 47.4
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.7e-11 71.6 76 47.4
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.9e-11 71.2 76 47.4
MBI14_g03116_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.9e-11 71.2 97 36.1
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 6.4e-11 70.9 96 42.7
Cpa.g.sc113.47 Carica papaya HOM05D005763 ORTHO05D005970 6.4e-11 70.9 96 39.6
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.4e-11 70.9 97 41.2
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 6.4e-11 70.9 96 41.7
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 6.4e-11 70.9 96 41.7
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.1e-10 70.1 76 44.7
TWI53G0470 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.4e-10 69.7 101 41.6
TAR078G0002 Trochodendron aralioides HOM05D001440 ORTHO05D000385 1.4e-10 69.7 97 37.1
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 2.4e-10 68.9 97 41.2
TAR383G0561 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.2e-10 68.6 101 38.6
Actinidia39002 Actinidia chinensis HOM05D001309 ORTHO05D000385 4.1e-10 68.2 96 39.6
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 4.1e-10 68.2 101 36.6
TAR375G0659 Trochodendron aralioides HOM05D021540 ORTHO05D000385 4.1e-10 68.2 45 71.1
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 5.4e-10 67.8 97 39.2
MBI06_g39196_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.4e-10 67.8 97 35.1
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 7.1e-10 67.4 101 35.6
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 7.1e-10 67.4 97 44.3
Nn7g37991 Nelumbo nucifera HOM05D001309 ORTHO05D000385 7.1e-10 67.4 104 43.3
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 9.2e-10 67.0 101 36.6
MBI15_g13426_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.6e-09 66.2 84 47.6
TAR625G0072 Trochodendron aralioides HOM05D009698 ORTHO05D000385 1.6e-09 66.2 84 41.7
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.1e-09 65.9 101 35.6
MBI17_g21607_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.1e-09 65.9 106 38.7
Os02g0129000 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 4.6e-09 64.7 101 35.6
Os07g0212400 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 4.6e-09 64.7 101 35.6
Os08g0367300 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 4.6e-09 64.7 101 35.6
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.6e-09 64.7 100 39.0
Nn2g11546 Nelumbo nucifera HOM05D001309 ORTHO05D000385 6.0e-09 64.3 98 34.7
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 7.8e-09 63.9 99 40.4
TAR371G1187 Trochodendron aralioides HOM05D001982 ORTHO05D003938 7.8e-09 63.9 80 40.0
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.3e-08 63.2 96 35.4
Sc11g0006850 Simmondsia chinensis HOM05D001309 ORTHO05D000385 1.3e-08 63.2 101 38.6
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 1.7e-08 62.8 99 36.4
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 1.7e-08 62.8 99 36.4
Zm00001eb308920 Zea mays HOM05D008576 ORTHO05D000385 1.7e-08 62.8 100 37.0
Zm00001eb388400 Zea mays HOM05D008576 ORTHO05D000385 1.7e-08 62.8 100 37.0
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 3.9e-08 61.6 99 35.4
Zm00001eb267220 Zea mays HOM05D008576 ORTHO05D000385 5.1e-08 61.2 101 35.6
Zm00001eb380870 Zea mays HOM05D008576 ORTHO05D000385 5.1e-08 61.2 101 35.6
Os10g0343500 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 6.6e-08 60.8 100 36.0
TAR507G0001 Trochodendron aralioides HOM05D021540 ORTHO05D000385 8.6e-08 60.5 37 73.0
TAR628G1080 Trochodendron aralioides HOM05D021540 ORTHO05D000385 8.6e-08 60.5 47 63.8
Nn4g24072 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.5e-07 59.7 104 39.4
arahy.Tifrunner.gnm1.ann1.LQJ2G8 Arachis hypogaea HOM05D010482 ORTHO05D000385 1.9e-07 59.3 96 30.2
COL.COLO4_33862 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.9e-07 59.3 99 37.4
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.9e-07 59.3 95 36.8
MBI02_g14797_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.9e-07 59.3 94 37.2
Rhsim01G0178700 Rhododendron simsii HOM05D001309 ORTHO05D000385 2.5e-07 58.9 101 40.6
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.3e-07 58.5 98 34.7
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 4.3e-07 58.2 99 34.3
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 4.3e-07 58.2 97 36.1
TAR623G0546 Trochodendron aralioides HOM05D000800 ORTHO05D000658 4.3e-07 58.2 30 86.7
TAR624G0498 Trochodendron aralioides HOM05D000007 ORTHO05D000017 4.3e-07 58.2 83 37.3
TAR626G1293 Trochodendron aralioides HOM05D009698 ORTHO05D000385 4.3e-07 58.2 83 38.6
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 5.6e-07 57.8 80 38.8
MBI19_g00150_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.6e-07 57.8 75 48.0
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 7.3e-07 57.4 95 35.8
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 7.3e-07 57.4 94 35.1
arahy.Tifrunner.gnm1.ann1.DXNF3X Arachis hypogaea HOM05D002954 ORTHO05D003353 9.5e-07 57.0 74 40.5
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 9.5e-07 57.0 97 36.1
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 9.5e-07 57.0 97 36.1
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 9.5e-07 57.0 97 36.1
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 9.5e-07 57.0 80 38.8
MBI09_g41431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 9.5e-07 57.0 75 45.3
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 9.5e-07 57.0 99 35.4
Zm00001eb269580 Zea mays HOM05D008576 ORTHO05D000385 1.2e-06 56.6 101 34.7
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.6e-06 56.2 91 33.0
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 1.6e-06 56.2 97 34.0
ClCG06G005780 Citrullus lanatus HOM05D001309 ORTHO05D000385 2.1e-06 55.8 75 36.0
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 2.1e-06 55.8 99 34.3
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 2.1e-06 55.8 75 37.3
BolC2t08113H Brassica oleracea HOM05D008309 ORTHO05D010308 2.8e-06 55.5 99 34.3
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 2.8e-06 55.5 88 33.0
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 2.8e-06 55.5 95 34.7
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 3.6e-06 55.1 95 35.8
Oeu029662.1 Olea europaea HOM05D009091 ORTHO05D003768 3.6e-06 55.1 94 33.0
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 3.6e-06 55.1 73 38.4
AT1G40087 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 4.7e-06 54.7 99 34.3
arahy.Tifrunner.gnm1.ann1.HKAM97 Arachis hypogaea HOM05D010482 ORTHO05D000385 4.7e-06 54.7 96 29.2
arahy.Tifrunner.gnm1.ann1.SC3PTI Arachis hypogaea HOM05D010482 ORTHO05D000385 4.7e-06 54.7 95 29.5
Cfa005665 Carpinus fangiana HOM05D020682 ORTHO05D020353 4.7e-06 54.7 94 38.3
HanXRQChr05g0141791 Helianthus annuus HOM05D008488 ORTHO05D000385 4.7e-06 54.7 93 43.0
HanXRQChr09g0254541 Helianthus annuus HOM05D008488 ORTHO05D000385 4.7e-06 54.7 93 43.0
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 4.7e-06 54.7 93 37.6
MBI02_g15369_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.7e-06 54.7 76 38.2
TAR622G0230 Trochodendron aralioides HOM05D009698 ORTHO05D000385 6.2e-06 54.3 68 42.6
BolC3t19893H Brassica oleracea HOM05D008309 ORTHO05D010308 8.1e-06 53.9 99 35.4
BolC8t50055H Brassica oleracea HOM05D008309 ORTHO05D010308 8.1e-06 53.9 99 35.4
BraA04t17652Z Brassica rapa HOM05D008309 ORTHO05D010308 8.1e-06 53.9 99 35.4
MD02G1315300 Malus domestica HOM05D008315 ORTHO05D009452 8.1e-06 53.9 98 33.7
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.1e-06 53.9 75 37.3


User provided reference genes

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