Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.1e-77 293.1 140 100.0
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 4.3e-61 238.0 143 81.8
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.6e-60 236.1 137 85.4
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 3.3e-53 211.8 110 84.5
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 7.3e-53 210.7 143 70.6
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 2.8e-52 208.8 145 68.3
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 6.2e-52 207.6 145 68.3
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 6.2e-52 207.6 113 82.3
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 2.3e-51 205.7 108 86.1
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 3.1e-51 205.3 143 69.2
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 5.2e-51 204.5 123 76.4
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 6.8e-51 204.1 119 76.5
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 8.9e-51 203.8 122 74.6
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 1.2e-50 203.4 110 80.9
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 2.0e-50 202.6 123 75.6
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 2.6e-50 202.2 147 69.4
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 4.4e-50 201.4 123 76.4
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 4.4e-50 201.4 123 76.4
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 4.4e-50 201.4 123 76.4
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 7.6e-50 200.7 110 80.9
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 7.6e-50 200.7 112 83.0
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 7.6e-50 200.7 110 80.0
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 9.9e-50 200.3 117 76.1
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 2.2e-49 199.1 108 82.4
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 2.9e-49 198.7 112 80.4
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 3.8e-49 198.4 113 77.9
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 6.4e-49 197.6 148 65.5
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 8.4e-49 197.2 112 78.6
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 1.1e-48 196.8 112 82.1
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 1.4e-48 196.4 112 79.5
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 1.9e-48 196.1 117 76.9
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 1.9e-48 196.1 117 76.9
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 1.9e-48 196.1 110 79.1
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 4.1e-48 194.9 117 76.9
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 4.1e-48 194.9 109 80.7
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 4.1e-48 194.9 117 75.2
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 5.4e-48 194.5 112 79.5
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 7.1e-48 194.1 108 81.5
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 1.6e-47 193.0 118 74.6
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.6e-47 193.0 112 77.7
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.6e-47 193.0 112 77.7
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 1.6e-47 193.0 132 68.9
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 1.6e-47 193.0 117 76.9
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 2.1e-47 192.6 118 73.7
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 2.1e-47 192.6 111 77.5
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 2.7e-47 192.2 117 75.2
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 4.6e-47 191.4 111 80.2
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 4.6e-47 191.4 109 78.9
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 6.0e-47 191.0 120 74.2
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 6.0e-47 191.0 121 75.2
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 6.0e-47 191.0 117 73.5
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 7.8e-47 190.7 113 74.3
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 1.7e-46 189.5 110 79.1
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 3.0e-46 188.7 108 77.8
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 3.0e-46 188.7 138 66.7
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 3.0e-46 188.7 111 74.8
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 3.9e-46 188.3 128 69.5
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 3.9e-46 188.3 108 79.6
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 3.9e-46 188.3 109 78.0
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 5.1e-46 188.0 108 78.7
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 5.1e-46 188.0 108 79.6
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 5.1e-46 188.0 121 72.7
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 5.1e-46 188.0 117 74.4
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 8.6e-46 187.2 111 74.8
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 8.6e-46 187.2 111 80.2
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 1.1e-45 186.8 121 73.6
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 1.1e-45 186.8 121 73.6
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 1.1e-45 186.8 121 73.6
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 1.5e-45 186.4 117 73.5
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 1.9e-45 186.0 111 79.3
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 2.5e-45 185.7 121 71.9
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 2.5e-45 185.7 108 77.8
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 2.5e-45 185.7 117 74.4
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 2.5e-45 185.7 143 65.0
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 3.3e-45 185.3 151 62.3
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 9.6e-45 183.7 111 74.8
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.2e-44 183.3 111 75.7
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 1.6e-44 183.0 108 77.8
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.6e-44 183.0 112 71.4
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 2.8e-44 182.2 117 70.9
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 2.8e-44 182.2 121 71.1
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 3.6e-44 181.8 108 76.9
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 3.6e-44 181.8 108 76.9
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 3.6e-44 181.8 108 74.1
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 1.1e-43 180.3 144 61.1
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 1.4e-43 179.9 110 74.5
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 3.1e-43 178.7 111 73.0
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 4.0e-43 178.3 138 63.0
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 1.5e-42 176.4 108 73.1
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 1.5e-42 176.4 111 71.2
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 4.4e-42 174.9 109 74.3
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.6e-42 174.1 109 75.2
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 1.3e-41 173.3 153 56.2
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 3.8e-41 171.8 109 72.5
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 1.4e-40 169.9 109 72.5
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 4.2e-40 168.3 176 50.6
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 7.1e-40 167.5 134 63.4
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 9.3e-40 167.2 146 61.0
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 1.7e-38 162.9 95 77.9
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.7e-38 162.9 95 78.9
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 6.9e-35 151.0 118 60.2
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 6.9e-35 151.0 138 57.2
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 9.9e-34 147.1 106 60.4
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 4.3e-29 131.7 105 53.3
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 4.8e-28 128.3 102 58.8
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 3.2e-24 115.5 72 72.2
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 7.1e-24 114.4 96 57.3
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 1.3e-22 110.2 108 48.1
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 6.2e-20 101.3 82 58.5
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 2.4e-19 99.4 65 69.2
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 3.1e-19 99.0 89 59.6
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 7.6e-18 94.4 107 42.1
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 4.9e-17 91.7 51 82.4
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 6.5e-17 91.3 51 78.4
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 8.4e-17 90.9 51 78.4
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 1.6e-15 86.7 49 79.6
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 1.6e-15 86.7 53 75.5
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 1.3e-14 83.6 48 79.2
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 5.1e-14 81.6 50 76.0
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 1.6e-12 76.6 45 77.8
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 2.1e-12 76.3 52 61.5
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 1.6e-07 60.1 94 39.4
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 2.1e-07 59.7 68 41.2


User provided reference genes

Program Settings