Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 5.3e-303 1043.5 509 100.0
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 4.5e-225 784.6 497 74.6
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 3.5e-214 748.4 497 72.2
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 1.5e-209 733.0 513 70.2
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 6.5e-208 727.6 497 72.4
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 2.1e-206 722.6 497 71.2
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 6.0e-206 721.1 497 71.4
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 1.0e-205 720.3 474 73.2
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 2.3e-205 719.2 474 73.0
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 3.9e-205 718.4 491 70.1
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 6.9e-202 707.6 497 69.6
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 2.0e-201 706.1 500 69.0
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 4.5e-201 704.9 491 69.7
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 4.5e-201 704.9 486 70.2
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 7.6e-201 704.1 494 69.2
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 1.0e-200 703.7 493 70.0
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 1.3e-200 703.4 497 69.4
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 1.7e-200 703.0 498 70.1
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 3.8e-200 701.8 497 69.4
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 5.0e-200 701.4 498 70.3
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 4.2e-199 698.4 482 70.7
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 7.2e-199 697.6 543 65.4
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 7.9e-198 694.1 492 68.9
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 7.9e-198 694.1 492 67.9
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 5.1e-197 691.4 469 71.2
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 6.7e-197 691.0 475 71.2
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 7.7e-193 677.6 486 69.5
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 1.0e-192 677.2 494 66.8
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 1.0e-192 677.2 493 66.9
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 1.4e-191 673.3 493 65.9
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 9.4e-191 670.6 493 66.1
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 7.9e-190 667.5 508 64.6
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 5.1e-189 664.8 497 66.0
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 1.1e-188 663.7 520 65.0
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 4.4e-188 661.8 505 65.0
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 3.8e-184 648.7 509 64.6
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 2.5e-183 646.0 494 65.4
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 5.5e-183 644.8 497 64.4
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 1.4e-181 640.2 514 64.4
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 2.3e-181 639.4 497 63.8
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 2.6e-180 636.0 506 63.6
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 3.3e-180 635.6 488 65.0
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 7.4e-180 634.4 497 64.2
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 9.7e-180 634.0 503 64.8
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 9.7e-180 634.0 523 61.8
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 1.7e-179 633.3 491 63.5
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 2.2e-179 632.9 501 62.3
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 2.8e-179 632.5 511 62.2
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 2.4e-178 629.4 496 64.7
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 3.8e-176 622.1 506 63.0
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 1.9e-175 619.8 506 62.8
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 4.7e-174 615.1 492 60.8
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 1.8e-173 613.2 501 61.1
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 1.8e-173 613.2 502 61.4
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 3.0e-173 612.5 493 62.7
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 3.0e-173 612.5 450 66.4
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 8.8e-173 610.9 457 66.7
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 1.2e-172 610.5 498 62.7
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 2.0e-172 609.8 496 62.1
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 2.6e-172 609.4 450 66.2
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 2.2e-171 606.3 478 62.3
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 2.2e-171 606.3 491 62.7
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 2.8e-171 605.9 471 64.5
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 4.8e-171 605.1 493 62.5
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 1.8e-170 603.2 490 62.2
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 2.4e-170 602.8 492 62.8
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 7.0e-170 601.3 497 60.8
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 1.3e-168 597.0 492 62.4
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 1.3e-168 597.0 453 65.6
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 5.0e-168 595.1 505 58.8
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 5.5e-167 591.7 495 60.0
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 7.2e-167 591.3 495 60.8
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 7.2e-167 591.3 495 60.8
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 3.0e-165 585.9 495 61.2
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 6.8e-165 584.7 496 58.9
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 1.5e-164 583.6 494 60.5
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 2.0e-164 583.2 495 60.0
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 3.4e-164 582.4 517 58.4
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 4.4e-164 582.0 495 59.6
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 7.5e-164 581.3 488 61.1
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 2.2e-163 579.7 511 59.9
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 4.8e-163 578.6 456 64.5
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 1.1e-162 577.4 491 61.5
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 4.1e-162 575.5 496 59.5
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 9.1e-162 574.3 508 57.7
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.6e-161 573.5 462 62.1
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 4.5e-161 572.0 494 59.5
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 2.9e-160 569.3 492 60.0
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 2.5e-159 566.2 492 59.1
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 8.9e-157 557.8 494 58.1
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 8.9e-157 557.8 492 58.7
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 3.5e-153 545.8 433 64.0
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 4.5e-153 545.4 456 62.1
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 2.3e-149 533.1 509 55.2
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 3.9e-144 515.8 492 56.7
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 2.9e-139 499.6 518 53.1
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 8.3e-139 498.0 514 53.3
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 1.6e-134 483.8 498 54.2
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 3.9e-128 462.6 314 71.0
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 3.3e-127 459.5 353 66.3
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 1.2e-126 457.6 562 45.2
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 5.4e-122 442.2 495 47.3
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 1.0e-120 438.0 415 54.7
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 2.1e-118 430.3 549 43.4
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 1.2e-108 397.9 399 54.4
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 3.9e-104 382.9 314 61.5
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 7.4e-103 378.6 348 58.0
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 9.9e-100 368.2 468 44.9
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 1.2e-97 361.3 498 44.2
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 4.2e-90 336.3 290 58.3
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 2.0e-68 264.2 443 40.0
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 3.6e-65 253.4 143 79.0
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 3.0e-64 250.4 346 40.5
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 2.2e-62 244.2 391 35.8
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 5.3e-53 213.0 723 26.4
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 6.6e-43 179.5 336 33.0
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 5.7e-39 166.4 105 71.4
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 7.0e-37 159.5 119 65.5
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 7.8e-28 129.4 77 79.2
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 6.8e-24 116.3 135 48.9
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 9.8e-23 112.5 141 48.2
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 7.8e-12 76.3 113 39.8
MD10G1121100 Malus domestica HOM05D006341 ORTHO05D000377 4.9e-06 57.0 45 60.0


User provided reference genes

Program Settings