Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 0.0e+00 1120.9 547 100.0
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 4.9e-262 907.5 540 82.6
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 4.2e-253 877.9 572 75.5
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 1.2e-252 876.3 517 80.9
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.6e-249 865.9 543 77.9
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 2.6e-247 858.6 542 77.7
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 9.9e-247 856.7 476 86.3
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 2.9e-246 855.1 553 73.8
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 1.4e-245 852.8 552 73.7
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 5.4e-245 850.9 542 76.9
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 9.3e-245 850.1 544 76.5
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.3e-243 846.3 573 73.8
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 3.0e-243 845.1 568 73.4
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 7.3e-242 840.5 476 84.0
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 5.3e-240 834.3 549 74.5
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 6.9e-240 833.9 476 82.6
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 1.5e-239 832.8 493 80.1
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 3.4e-239 831.6 552 74.1
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 4.5e-239 831.2 546 75.3
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 6.4e-238 827.4 544 74.4
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 1.9e-237 825.9 476 82.1
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 4.2e-237 824.7 548 73.5
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.2e-236 823.2 465 83.4
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 2.1e-236 822.4 466 83.0
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.3e-235 818.9 468 82.5
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 5.1e-235 817.8 545 74.7
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 6.7e-235 817.4 533 74.3
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.1e-234 816.6 476 80.9
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 4.3e-234 814.7 471 81.3
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 5.6e-234 814.3 471 81.3
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 9.6e-234 813.5 471 81.1
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 2.1e-233 812.4 476 80.9
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 4.0e-232 808.1 532 73.3
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 9.0e-232 807.0 551 71.7
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 1.2e-231 806.6 460 82.2
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 2.0e-231 805.8 493 77.9
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 2.6e-231 805.4 547 72.2
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 1.3e-230 803.1 619 66.9
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 3.8e-230 801.6 465 80.9
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 3.8e-230 801.6 551 71.5
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 4.2e-229 798.1 544 73.9
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 5.5e-229 797.7 499 76.4
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 9.3e-229 797.0 502 75.1
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 1.6e-228 796.2 461 81.3
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 3.5e-228 795.0 470 80.4
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 7.9e-228 793.9 536 70.5
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 7.9e-228 793.9 542 71.2
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 1.0e-227 793.5 531 72.1
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 1.0e-227 793.5 551 70.4
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.3e-227 793.1 466 80.3
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 5.1e-227 791.2 527 71.7
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 2.5e-226 788.9 544 71.3
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 4.3e-226 788.1 476 78.6
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 7.4e-226 787.3 540 70.9
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 9.6e-226 786.9 544 72.6
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 1.3e-225 786.6 482 77.2
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 1.6e-225 786.2 503 75.5
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 1.6e-225 786.2 537 71.3
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 2.1e-225 785.8 516 73.6
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 2.8e-225 785.4 629 64.5
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 6.2e-225 784.3 545 70.5
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 8.2e-225 783.9 546 70.3
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 8.2e-225 783.9 543 71.8
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 1.1e-224 783.5 463 79.7
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.4e-224 783.1 541 70.4
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 1.4e-224 783.1 655 62.1
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 5.3e-224 781.2 481 76.7
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.5e-223 779.6 463 79.9
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 2.0e-223 779.2 539 70.1
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 3.4e-223 778.5 499 74.5
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 7.6e-223 777.3 465 77.2
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 5.0e-222 774.6 469 76.3
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 6.5e-222 774.2 451 80.9
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 1.9e-221 772.7 522 70.9
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 9.3e-221 770.4 547 69.7
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 1.2e-220 770.0 498 75.3
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 1.6e-220 769.6 541 68.8
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 3.5e-220 768.5 510 72.2
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 1.9e-218 762.7 466 75.8
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 5.7e-218 761.1 486 73.7
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.6e-217 759.6 543 68.7
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 2.2e-217 759.2 461 77.2
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 4.8e-217 758.1 465 77.4
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.1e-216 756.9 478 74.5
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 3.1e-216 755.4 526 69.8
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 4.1e-216 755.0 540 68.9
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 6.9e-216 754.2 542 68.8
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 9.0e-216 753.8 543 68.3
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.0e-215 752.7 542 68.6
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 1.3e-214 750.0 540 68.5
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 2.2e-214 749.2 487 72.1
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 2.2e-214 749.2 540 68.5
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 3.8e-214 748.4 532 69.7
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 4.2e-213 745.0 499 72.3
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 5.5e-213 744.6 463 80.1
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.8e-208 729.6 436 77.3
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.2e-207 726.9 476 73.3
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 3.4e-207 725.3 548 69.0
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.4e-207 725.3 545 67.0
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 3.8e-206 721.8 465 73.1
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 7.2e-205 717.6 465 72.7
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 3.0e-203 712.2 421 79.1
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 6.3e-201 704.5 421 78.4
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 1.8e-195 686.4 458 70.3
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 5.2e-195 684.9 442 73.3
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 2.2e-190 669.5 421 75.3
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 8.5e-190 667.5 464 66.2
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 1.9e-189 666.4 462 67.7
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 6.1e-188 661.4 481 64.9
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 9.8e-186 654.1 464 65.9
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 3.7e-185 652.1 448 67.6
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 6.3e-185 651.4 464 65.7
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 3.5e-183 645.6 466 64.4
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 3.4e-178 629.0 476 66.2
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.7e-178 628.2 363 81.8
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 3.1e-176 622.5 462 65.2
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.5e-175 619.0 478 63.2
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.5e-170 603.6 459 63.8
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.0e-167 593.2 452 61.7
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 4.7e-164 582.0 482 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 2.1e-156 556.6 472 57.6
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.6e-143 512.3 395 66.6
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 8.6e-142 508.1 355 69.0
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.9e-126 456.1 316 72.2
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 1.8e-123 447.2 502 48.2
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.1e-120 438.0 421 51.5
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 5.5e-120 435.6 269 77.0
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 3.5e-119 433.0 255 78.8
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.1e-108 397.1 261 71.3
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.1e-99 368.2 333 59.5
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-90 338.2 260 60.8
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.0e-89 335.1 214 70.1
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 3.2e-88 330.1 199 80.4
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.3e-76 291.6 242 60.3
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 2.2e-68 264.2 217 66.8
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 2.8e-55 220.7 144 73.6
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 8.0e-55 219.2 162 63.0
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 1.6e-47 194.9 182 58.8
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.1e-46 190.7 113 75.2
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 1.3e-44 185.3 178 57.3
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 1.1e-38 165.6 101 80.2
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.2e-36 157.9 115 66.1
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 2.1e-34 151.4 90 75.6
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.0e-33 149.1 129 59.7
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 1.4e-22 112.1 113 57.5
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 3.6e-15 87.4 60 58.3
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 8.1e-15 86.3 85 55.3
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 4.5e-13 80.5 53 75.5
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 4.5e-13 80.5 53 75.5
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 9.9e-13 79.3 100 50.0
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 1.3e-12 79.0 58 74.1
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 4.9e-12 77.0 56 66.1
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 6.4e-12 76.6 65 67.7


User provided reference genes

Program Settings