Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 3.1e-125 451.8 234 100.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.1e-106 390.2 223 90.6
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.8e-96 356.3 222 80.6
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 7.8e-92 340.9 229 76.9
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 1.0e-91 340.5 221 80.5
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.2e-89 333.6 223 77.6
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 2.1e-89 332.8 224 75.9
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 5.8e-87 324.7 224 74.1
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.9e-86 322.4 224 73.2
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 5.3e-80 301.6 223 70.4
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 6.9e-80 301.2 202 74.3
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 6.4e-78 294.7 203 71.4
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 5.4e-77 291.6 224 67.0
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.6e-76 290.0 224 68.3
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 1.6e-76 290.0 224 67.0
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 1.6e-76 290.0 224 67.0
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 2.7e-76 289.3 225 68.4
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 3.5e-76 288.9 225 67.6
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 6.0e-76 288.1 210 70.0
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.0e-75 287.3 224 69.2
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 5.1e-75 285.0 230 62.6
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.5e-74 283.5 227 67.0
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 3.3e-74 282.3 232 62.9
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 2.8e-73 279.3 225 64.4
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 3.6e-73 278.9 223 65.5
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.6e-73 278.9 232 65.1
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 3.6e-73 278.9 240 62.1
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 6.2e-73 278.1 223 65.0
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 8.1e-73 277.7 223 65.0
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 1.8e-72 276.6 223 65.0
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.0e-71 273.1 203 72.4
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 4.5e-71 271.9 223 65.5
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 8.4e-70 267.7 227 63.9
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 3.2e-69 265.8 228 62.7
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.2e-68 263.8 222 61.7
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.6e-68 263.5 219 63.0
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 2.7e-68 262.7 211 64.5
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 7.9e-68 261.2 224 60.7
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 7.9e-68 261.2 211 63.5
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.0e-67 260.8 235 61.3
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.0e-67 260.8 226 61.9
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.3e-67 260.4 224 63.8
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 6.7e-67 258.1 214 63.6
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 7.4e-66 254.6 225 59.6
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.1e-65 253.1 222 61.7
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 3.7e-65 252.3 225 59.1
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 8.1e-65 251.1 225 59.1
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 8.1e-65 251.1 229 60.7
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.1e-64 250.8 229 59.4
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 3.1e-64 249.2 225 58.2
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.5e-63 246.9 227 59.0
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 4.5e-63 245.4 188 67.0
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 7.6e-63 244.6 223 57.8
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.0e-62 244.2 225 58.2
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 1.3e-62 243.8 219 58.9
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.7e-62 243.4 230 57.8
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.2e-62 243.0 211 61.1
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 2.2e-62 243.0 230 57.8
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 3.8e-62 242.3 217 59.0
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.8e-62 242.3 231 56.3
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 3.8e-62 242.3 232 56.9
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 3.8e-62 242.3 221 58.8
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 8.4e-62 241.1 204 61.3
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.1e-61 240.7 231 56.3
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.4e-61 240.4 234 56.0
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.9e-61 240.0 231 56.7
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.5e-61 239.6 222 59.0
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 3.2e-61 239.2 217 58.5
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 3.2e-61 239.2 226 56.2
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 3.2e-61 239.2 225 56.4
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 4.2e-61 238.8 189 64.0
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 5.5e-61 238.4 242 55.0
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 5.5e-61 238.4 219 58.4
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 7.1e-61 238.0 225 56.9
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 9.3e-61 237.7 225 56.4
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.2e-60 237.3 231 55.4
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.2e-60 237.3 192 63.5
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.6e-60 236.9 220 56.8
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.1e-60 236.5 225 56.4
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.1e-60 236.5 225 56.4
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.0e-59 234.2 222 57.7
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 2.3e-59 233.0 215 57.2
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 6.7e-59 231.5 270 49.3
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 6.7e-59 231.5 190 62.6
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 6.7e-59 231.5 190 63.7
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 5.7e-58 228.4 224 57.6
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 1.6e-57 226.9 221 53.8
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.1e-57 226.5 192 62.0
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 8.2e-57 224.6 224 59.4
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 5.3e-56 221.9 230 53.9
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 7.6e-55 218.0 214 54.7
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.0e-54 217.6 218 55.0
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 1.0e-54 217.6 221 51.6
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.3e-54 217.2 199 60.8
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 1.7e-54 216.9 227 50.7
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.7e-54 216.9 224 52.7
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 8.5e-54 214.5 179 62.0
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.4e-53 213.8 163 68.7
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 1.4e-53 213.8 232 51.3
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 5.5e-53 211.8 201 52.7
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 5.5e-53 211.8 164 68.3
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 5.5e-53 211.8 235 52.8
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.3e-50 202.2 295 44.1
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 2.4e-48 196.4 355 37.5
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 2.4e-48 196.4 207 55.1
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 4.1e-48 195.7 256 46.9
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.5e-47 193.7 160 66.9
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.3e-46 190.7 210 46.2
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.0e-46 188.7 188 54.3
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.4e-45 187.2 250 46.8
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.4e-45 187.2 268 47.0
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.2e-45 185.7 118 75.4
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 7.2e-45 184.9 152 65.1
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 2.3e-43 179.9 168 56.0
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 2.6e-39 166.4 162 59.9
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 2.9e-38 162.9 173 56.1
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.9e-37 160.2 129 67.4
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 2.5e-37 159.8 131 63.4
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.2e-36 157.5 128 62.5
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.7e-33 146.0 145 56.6
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 9.4e-29 131.3 222 42.3
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 2.7e-28 129.8 162 50.0
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.8e-27 127.1 218 39.4
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.6e-26 123.2 181 45.9
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.7e-25 120.6 219 37.0
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 9.1e-24 114.8 149 44.3
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.5e-23 112.8 104 57.7
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.3e-22 110.9 92 63.0
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 2.9e-22 109.8 219 33.3
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 1.8e-19 100.5 100 54.0
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 9.8e-18 94.7 209 32.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.7e-17 92.8 173 39.9
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 3.7e-17 92.8 99 52.5
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 2.9e-14 83.2 84 58.3
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.8e-14 82.8 58 75.9
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 4.2e-13 79.3 213 27.2
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.6e-12 77.4 75 58.7
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 3.6e-12 76.3 66 63.6
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 4.7e-12 75.9 85 50.6
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 4.7e-12 75.9 85 50.6
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.8e-11 73.9 66 53.0
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 6.8e-11 72.0 45 75.6
TAR376G0931 Trochodendron aralioides HOM05D007660 ORTHO05D009442 1.2e-10 71.2 143 36.4
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 7.0e-08 62.0 86 43.0
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 3.5e-07 59.7 64 50.0
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.3e-06 57.8 64 46.9


User provided reference genes

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