Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.2e-118 429.9 212 100.0
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.1e-87 327.0 200 80.5
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.1e-79 298.9 200 71.0
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 3.1e-79 298.9 207 67.6
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 9.0e-79 297.4 200 71.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 9.3e-76 287.3 187 74.9
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 5.1e-74 281.6 202 66.8
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.9e-73 279.6 187 73.3
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.9e-73 279.6 196 68.4
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 4.3e-73 278.5 200 66.5
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.1e-72 276.2 186 70.4
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.8e-72 275.0 195 67.2
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 4.8e-72 275.0 199 66.3
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.2e-72 274.6 187 71.7
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 6.2e-72 274.6 194 69.1
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 6.2e-72 274.6 200 68.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 3.1e-71 272.3 199 65.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 6.9e-71 271.2 200 64.0
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 6.9e-71 271.2 200 63.5
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.0e-69 267.3 199 64.3
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-69 266.5 196 67.9
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.2e-69 266.2 200 62.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.2e-69 266.2 200 62.0
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.9e-69 265.8 196 65.8
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 6.5e-69 264.6 199 63.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.4e-68 263.5 199 64.3
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.9e-68 263.1 200 64.5
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 3.2e-68 262.3 190 66.3
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.2e-68 262.3 200 65.5
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.2e-67 260.4 199 63.3
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.2e-67 260.4 200 64.5
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.1e-67 259.6 194 64.9
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 3.5e-67 258.8 198 61.1
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 6.0e-67 258.1 194 63.9
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.3e-66 256.1 200 61.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 5.1e-66 255.0 196 62.2
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 5.1e-66 255.0 200 62.0
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 6.7e-66 254.6 205 62.9
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 6.7e-66 254.6 196 62.2
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 8.7e-66 254.2 200 61.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 7.4e-65 251.1 201 62.2
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 9.6e-65 250.8 199 60.3
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.3e-64 250.4 198 59.6
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 2.1e-64 249.6 199 60.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.8e-64 249.2 197 61.9
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.8e-64 249.2 200 61.5
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.8e-64 249.2 195 61.0
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 4.8e-64 248.4 193 63.2
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.1e-63 247.3 193 62.2
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.8e-63 246.5 247 50.6
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.8e-63 246.5 194 63.4
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.8e-63 246.5 191 61.3
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.8e-63 246.5 188 61.2
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 2.4e-63 246.1 194 62.4
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.4e-63 246.1 199 57.8
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.4e-63 246.1 191 62.3
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.4e-63 246.1 194 62.9
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 6.9e-63 244.6 200 59.0
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-62 243.8 200 59.0
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.6e-62 242.7 194 62.4
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 3.4e-62 242.3 195 60.5
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.5e-62 241.9 195 58.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.5e-62 241.9 193 58.5
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 5.8e-62 241.5 193 57.5
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 5.8e-62 241.5 193 59.1
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 5.8e-62 241.5 194 60.8
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.0e-61 240.7 198 59.1
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.7e-61 240.0 199 60.8
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.2e-61 239.6 181 62.4
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.1e-60 237.3 198 59.1
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 1.4e-60 236.9 200 57.5
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.4e-60 236.9 194 59.3
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.4e-60 236.9 198 57.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.9e-60 236.5 192 59.4
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.5e-60 236.1 191 58.1
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.2e-60 235.7 202 58.9
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 3.2e-60 235.7 202 56.4
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 4.2e-60 235.3 194 60.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 5.5e-60 235.0 194 59.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.2e-60 234.6 192 59.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 9.3e-60 234.2 192 58.9
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.6e-59 233.4 192 59.9
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.6e-59 233.4 196 59.2
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 2.1e-59 233.0 191 57.1
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.7e-59 232.6 191 57.1
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 2.7e-59 232.6 194 59.8
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.5e-59 232.3 183 57.4
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 7.9e-59 231.1 201 56.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.0e-58 230.7 196 55.1
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.7e-58 228.0 190 57.4
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.5e-57 226.9 192 59.4
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.9e-57 226.5 190 56.8
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.3e-57 225.7 181 59.7
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.3e-57 225.7 203 54.7
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.3e-57 225.7 186 57.5
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 7.4e-57 224.6 203 56.7
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.2e-56 223.0 190 55.3
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.7e-56 222.2 203 55.2
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.1e-55 220.7 192 55.7
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 4.1e-55 218.8 203 54.7
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 5.3e-55 218.4 192 56.2
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 6.9e-55 218.0 190 54.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.2e-54 217.2 202 55.0
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.5e-54 216.9 192 55.7
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.0e-54 216.5 194 53.1
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-54 215.7 192 55.7
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 5.9e-54 214.9 199 53.3
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-53 214.2 206 54.4
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.0e-53 214.2 199 51.8
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.3e-53 213.8 186 55.9
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.8e-53 212.2 201 55.2
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 3.8e-53 212.2 191 53.4
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 6.5e-53 211.5 203 53.7
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-52 210.7 202 53.5
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.9e-52 209.9 194 51.5
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 2.5e-52 209.5 144 66.0
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.5e-52 208.4 188 56.4
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.6e-51 206.8 174 56.3
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.7e-51 206.1 192 54.2
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 4.6e-51 205.3 194 51.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.0e-50 204.1 194 50.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.0e-50 204.1 196 49.5
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.0e-50 202.6 188 52.7
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 3.0e-50 202.6 149 62.4
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 5.1e-50 201.8 179 54.7
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 6.7e-50 201.4 194 50.0
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 6.7e-50 201.4 188 51.1
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.1e-49 200.7 194 49.0
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 7.4e-49 198.0 178 56.7
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.4e-49 198.0 192 52.1
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.2e-48 196.4 169 56.8
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 3.7e-48 195.7 188 47.9
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.7e-48 195.7 149 62.4
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.4e-47 193.7 188 47.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.4e-47 193.7 191 51.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.8e-47 193.4 196 48.5
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.4e-47 193.0 127 70.9
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.1e-47 192.6 188 48.9
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 5.3e-47 191.8 188 48.4
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 9.1e-47 191.0 191 50.8
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.2e-46 190.7 171 53.8
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 2.6e-46 189.5 202 48.0
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 7.7e-46 188.0 196 49.5
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.9e-45 186.0 196 49.0
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.0e-45 185.3 165 55.8
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 6.5e-45 184.9 164 56.7
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.1e-44 184.1 196 48.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.9e-44 183.3 194 47.9
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.1e-43 179.9 194 47.9
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.0e-41 173.3 146 56.2
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.4e-41 172.2 147 56.5
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 9.7e-41 171.0 194 47.4
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.3e-40 170.6 188 44.1
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.8e-40 168.7 155 52.9
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.2e-40 167.9 156 56.4
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 4.5e-38 162.2 188 44.1
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 7.7e-38 161.4 195 42.6
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 2.2e-37 159.8 195 42.6
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.1e-36 157.5 197 44.2
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.2e-36 156.0 126 57.1
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.2e-36 155.6 134 53.7
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.0e-34 149.4 196 44.9
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.0e-34 149.1 156 51.3
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.7e-27 126.3 114 51.8
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 3.8e-21 105.9 185 38.4
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.1e-20 104.4 188 34.6
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 5.5e-20 102.1 108 50.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.5e-17 94.0 169 34.3
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 5.7e-17 92.0 198 32.3
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.4e-15 87.4 77 51.9
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.4e-15 86.7 219 27.4
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.4e-15 85.5 105 44.8
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.7e-14 83.2 82 51.2
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 4.5e-14 82.4 216 27.8
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.6e-13 78.6 74 48.6
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 9.5e-12 74.7 166 33.1
Pp3c23_8370 Physcomitrium patens HOM05D003838 ORTHO05D004444 5.9e-06 55.5 166 29.5


User provided reference genes

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