Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.8e-54 214.9 103 100.0
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.2e-45 183.3 103 88.3
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.0e-43 177.6 103 85.4
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.0e-43 177.6 103 85.4
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.9e-38 161.8 102 79.4
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 1.7e-30 136.0 105 65.7
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 1.0e-27 126.7 104 61.5
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 1.1e-26 123.2 101 64.4
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 1.9e-26 122.5 106 63.2
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 2.5e-26 122.1 105 60.0
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 2.5e-26 122.1 106 58.5
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 7.3e-26 120.6 107 57.9
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.5e-26 120.2 87 72.4
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 1.2e-25 119.8 100 59.0
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 1.6e-25 119.4 102 60.8
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 1.6e-25 119.4 109 56.0
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 2.1e-25 119.0 104 59.6
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 2.8e-25 118.6 100 57.0
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 2.8e-25 118.6 102 56.9
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 4.7e-25 117.9 106 58.5
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 8.1e-25 117.1 105 56.2
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 1.1e-24 116.7 102 57.8
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.1e-24 116.7 100 59.0
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.1e-24 116.7 106 54.7
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 1.1e-24 116.7 100 57.0
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 1.4e-24 116.3 103 56.3
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 2.4e-24 115.5 109 56.0
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 3.1e-24 115.2 110 55.5
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 3.1e-24 115.2 107 55.1
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 3.1e-24 115.2 109 56.0
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 3.1e-24 115.2 101 57.4
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 4.0e-24 114.8 107 56.1
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 4.0e-24 114.8 103 59.2
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 5.2e-24 114.4 110 57.3
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 5.2e-24 114.4 107 56.1
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 5.2e-24 114.4 101 55.4
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 6.8e-24 114.0 108 58.3
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 8.9e-24 113.6 104 56.7
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 8.9e-24 113.6 108 57.4
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 1.2e-23 113.2 103 56.3
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 1.2e-23 113.2 103 56.3
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 1.2e-23 113.2 115 52.2
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 1.5e-23 112.8 103 55.3
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 1.5e-23 112.8 103 55.3
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 1.5e-23 112.8 102 55.9
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 2.0e-23 112.5 107 53.3
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 2.0e-23 112.5 101 58.4
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 2.0e-23 112.5 101 57.4
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 3.4e-23 111.7 103 53.4
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 3.4e-23 111.7 103 53.4
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 7.6e-23 110.5 110 55.5
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 7.6e-23 110.5 102 55.9
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 9.9e-23 110.2 101 54.5
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 9.9e-23 110.2 103 54.4
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 9.9e-23 110.2 100 55.0
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.9e-23 110.2 56 98.2
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 1.3e-22 109.8 102 54.9
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 1.3e-22 109.8 104 51.9
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 1.3e-22 109.8 102 53.9
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.7e-22 109.4 103 52.4
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 1.7e-22 109.4 111 52.3
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 2.2e-22 109.0 101 53.5
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 2.2e-22 109.0 110 54.5
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 2.2e-22 109.0 100 58.0
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 2.2e-22 109.0 104 56.7
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 2.2e-22 109.0 104 56.7
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 2.9e-22 108.6 104 52.9
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.8e-22 108.2 94 56.4
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 3.8e-22 108.2 108 53.7
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 3.8e-22 108.2 112 51.8
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 4.9e-22 107.8 103 52.4
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 4.9e-22 107.8 103 52.4
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 4.9e-22 107.8 101 54.5
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 8.4e-22 107.1 113 49.6
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 8.4e-22 107.1 111 51.4
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.1e-21 106.7 103 56.3
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 1.1e-21 106.7 114 52.6
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.4e-21 106.3 95 58.9
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 1.4e-21 106.3 104 53.8
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 2.4e-21 105.5 106 52.8
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 2.4e-21 105.5 104 55.8
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 4.2e-21 104.8 113 54.0
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 5.4e-21 104.4 100 51.0
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 7.1e-21 104.0 99 53.5
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 9.2e-21 103.6 113 54.9
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 1.6e-20 102.8 107 52.3
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 2.7e-20 102.1 112 52.7
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 3.5e-20 101.7 105 52.4
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 6.0e-20 100.9 99 49.5
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 6.0e-20 100.9 104 51.9
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 6.0e-20 100.9 118 48.3
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.3e-19 99.0 104 52.9
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 6.6e-19 97.4 114 50.9
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.5e-18 96.3 103 49.5
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.9e-18 95.9 93 52.7
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 4.3e-18 94.7 103 48.5
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 1.3e-17 93.2 105 48.6
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 3.6e-17 91.7 101 48.5
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 6.2e-17 90.9 103 47.6
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 6.2e-17 90.9 103 47.6
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 4.4e-15 84.7 101 46.5
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.6e-15 84.0 51 82.4
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 2.9e-14 82.0 83 53.0
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 1.4e-13 79.7 102 43.1
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 3.0e-11 72.0 59 69.5
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 2.5e-10 68.9 51 68.6
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.6e-09 66.2 103 38.8
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 1.6e-09 66.2 54 59.3
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 8.1e-09 63.9 54 57.4
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 8.1e-09 63.9 54 57.4
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.4e-08 63.2 99 40.4
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 2.4e-08 62.4 42 71.4
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.2e-07 60.1 42 71.4
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 2.0e-07 59.3 72 47.2
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 4.5e-07 58.2 59 55.9
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 6.4e-06 54.3 59 47.5


User provided reference genes

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