Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1521.5 776 100.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1377.8 778 89.7
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1290.8 778 84.8
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1268.4 786 83.5
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1261.5 778 83.8
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1218.4 776 79.9
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1214.5 731 84.3
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1213.4 790 79.2
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1213.0 776 79.4
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1213.0 781 81.3
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1204.5 780 79.6
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1202.6 772 79.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1201.4 782 78.9
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1200.3 755 81.3
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1198.0 769 79.6
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1197.6 783 78.3
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1197.2 763 80.2
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1197.2 772 78.5
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1196.8 765 79.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1194.9 780 79.4
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1194.5 778 79.0
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1191.4 760 79.7
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1190.3 794 78.6
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1189.9 754 80.6
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1189.9 783 78.5
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1182.9 794 78.3
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1182.5 794 78.0
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1181.8 794 78.1
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1179.9 783 78.8
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1178.7 790 78.2
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1178.7 777 78.6
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1177.9 729 81.8
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1175.2 700 84.7
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1172.1 772 78.4
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1171.8 781 78.1
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1170.2 723 81.9
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1169.5 777 78.1
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1161.4 824 73.2
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1158.7 760 77.8
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1157.9 781 76.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1157.9 771 78.2
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1157.1 745 78.4
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1157.1 719 82.9
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1154.4 733 80.1
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1149.0 717 81.7
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1146.3 776 76.2
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1145.2 734 78.9
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1135.2 781 76.2
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1133.2 776 74.9
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1131.3 730 78.4
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1121.7 788 74.9
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 0.0e+00 1120.9 693 81.4
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1119.8 778 74.4
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1119.4 788 75.1
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1118.6 706 80.2
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1116.3 792 74.4
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1110.5 812 73.2
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 0.0e+00 1107.4 649 85.8
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1106.3 766 74.5
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1102.8 757 75.8
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1096.6 786 73.0
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 0.0e+00 1094.3 843 69.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1093.6 758 74.1
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1093.6 758 74.1
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1090.9 779 73.2
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1090.1 793 73.8
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1085.1 740 74.6
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 0.0e+00 1080.5 687 79.5
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 780 73.3
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 0.0e+00 1077.0 778 73.7
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 5.3e-312 1073.5 728 75.4
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 5.3e-312 1073.5 765 72.8
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.7e-311 1071.2 778 71.7
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 2.3e-310 1068.5 777 72.2
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 3.1e-310 1068.1 771 73.0
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 3.1e-310 1068.1 777 72.8
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 3.4e-309 1064.7 727 76.9
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 2.4e-307 1058.5 772 73.4
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 3.5e-306 1054.7 787 70.5
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 4.6e-306 1054.3 758 71.6
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 6.0e-306 1053.9 792 70.1
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 6.6e-305 1050.4 793 70.5
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 8.7e-305 1050.0 787 69.8
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 8.1e-303 1043.5 786 70.0
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.8e-302 1042.3 782 70.6
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 3.4e-301 1038.1 792 69.4
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 5.4e-299 1030.8 776 70.4
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 3.5e-298 1028.1 777 70.0
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 3.5e-298 1028.1 788 69.3
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 6.0e-298 1027.3 764 69.9
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 7.9e-298 1026.9 765 69.5
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 5.1e-297 1024.2 777 69.9
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 6.6e-297 1023.8 777 69.8
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.5e-296 1021.9 699 75.4
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 6.2e-295 1017.3 732 71.6
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.2e-285 986.5 746 70.4
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.5e-259 899.0 630 76.5
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 9.1e-246 854.0 564 75.4
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.0e-245 852.8 541 77.4
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 2.7e-242 842.4 763 57.4
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 2.8e-239 832.4 744 58.7
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.1e-234 816.2 729 58.0
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 8.8e-233 810.8 714 59.8
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.5e-232 810.1 719 59.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 8.6e-228 794.3 541 68.2
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 8.9e-217 757.7 531 68.0
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.3e-212 743.0 529 67.1
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.1e-198 697.6 518 65.3
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.6e-192 676.4 414 79.5
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 3.3e-179 632.9 403 79.4
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.3e-169 599.0 414 68.8
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 2.2e-151 540.4 343 78.7
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-132 478.0 269 84.4
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.9e-102 377.9 701 35.9
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 2.1e-101 374.4 491 42.4
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.6e-99 367.5 274 65.0
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 7.0e-97 359.4 625 42.2
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 6.6e-95 352.8 295 63.4
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 2.5e-94 350.9 279 70.6
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 6.0e-72 276.6 583 32.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 3.0e-71 274.2 351 48.4
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 3.4e-43 181.0 99 83.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 9.7e-38 162.9 83 90.4
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 2.5e-33 148.3 139 59.0
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 4.2e-33 147.5 134 59.0
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 2.1e-32 145.2 104 70.2
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.6e-27 128.3 141 52.5
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 6.3e-21 107.1 54 88.9
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 3.2e-17 94.7 103 48.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 9.4e-17 93.2 62 71.0
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 9.1e-12 76.6 74 58.1
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 1.3e-10 72.8 67 59.7
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 1.3e-10 72.8 41 80.5
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.5e-09 69.3 363 24.8
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.4e-07 62.8 79 45.6
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.2e-06 59.7 258 23.6
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 2.0e-06 58.9 254 23.6
PRCOL_00000676 Prasinoderma coloniale HOM05D008447 ORTHO05D010638 2.0e-06 58.9 335 25.1
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 2.0e-06 58.9 267 24.3
Actinidia37487 Actinidia chinensis HOM05D005554 ORTHO05D058019 4.4e-06 57.8 65 55.4
Migut.J01799 Erythranthe guttata HOM05D008447 ORTHO05D010638 9.8e-06 56.6 260 24.6


User provided reference genes

Program Settings