Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 0.0e+00 1302.0 678 100.0
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 2.5e-300 1035.0 670 80.3
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 6.0e-294 1013.8 679 77.0
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 4.3e-292 1007.7 679 77.6
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 2.8e-291 1005.0 656 78.8
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 4.8e-291 1004.2 662 78.2
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 3.1e-290 1001.5 657 78.5
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 4.0e-290 1001.1 655 79.2
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 3.4e-289 998.0 659 78.1
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 4.5e-289 997.7 668 77.2
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 1.8e-285 985.7 680 76.3
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 3.9e-285 984.6 655 78.2
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.9e-284 982.2 657 78.4
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 4.3e-284 981.1 657 78.5
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 5.6e-284 980.7 659 76.8
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 9.0e-282 973.4 655 75.9
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 2.9e-280 968.4 655 75.9
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 6.5e-280 967.2 660 75.6
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 2.5e-279 965.3 677 74.6
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 7.1e-279 963.8 657 77.6
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 3.5e-278 961.4 662 75.5
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.1e-276 956.4 662 74.9
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 8.2e-275 950.3 662 73.4
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.1e-274 949.9 661 75.2
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.8e-274 949.1 664 74.2
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 2.4e-274 948.7 661 73.2
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 4.1e-274 948.0 680 72.6
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 6.9e-274 947.2 663 74.5
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 6.9e-274 947.2 660 74.4
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.5e-273 946.0 653 74.1
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 4.5e-273 944.5 661 73.8
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 4.5e-273 944.5 675 73.0
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 5.8e-273 944.1 661 73.1
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.7e-272 942.6 663 73.3
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.7e-272 942.6 654 74.0
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 2.2e-272 942.2 657 75.5
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.1e-271 939.9 654 74.3
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.9e-271 939.1 661 73.1
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 4.2e-271 937.9 679 71.6
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 4.2e-271 937.9 679 71.7
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 7.2e-271 937.2 662 74.3
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 3.5e-270 934.9 653 73.8
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 3.5e-270 934.9 654 73.4
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 3.0e-269 931.8 663 72.4
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 7.4e-268 927.2 656 73.3
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.6e-267 926.0 657 73.2
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.1e-266 923.3 657 73.2
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 2.0e-265 919.1 663 72.2
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 4.5e-265 917.9 670 71.9
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 5.9e-265 917.5 655 72.8
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 7.7e-265 917.1 694 70.5
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 7.7e-265 917.1 655 72.2
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.0e-264 916.8 658 72.0
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 2.9e-264 915.2 669 71.3
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 1.1e-263 913.3 665 71.6
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.9e-263 912.5 661 71.9
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 4.6e-262 907.9 657 72.1
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 7.9e-262 907.1 660 71.5
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 7.4e-260 900.6 653 71.2
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 2.2e-259 899.0 661 71.0
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 4.8e-259 897.9 653 71.5
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 6.3e-259 897.5 663 70.4
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 8.2e-259 897.1 694 69.2
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.8e-258 896.0 659 71.2
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 1.8e-258 896.0 659 70.9
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 4.1e-258 894.8 694 68.9
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 6.9e-258 894.0 659 70.0
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.4e-255 886.3 652 71.0
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 2.5e-255 885.6 587 79.0
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 7.2e-255 884.0 663 70.1
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 3.0e-253 878.6 660 69.4
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.7e-251 871.7 692 68.9
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 4.8e-251 871.3 648 70.1
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.4e-250 869.8 612 74.8
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.4e-250 869.0 727 66.7
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.2e-249 866.7 591 76.3
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 4.7e-246 854.7 668 68.1
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 8.0e-246 854.0 618 73.5
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 2.3e-245 852.4 662 69.0
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 3.0e-245 852.0 604 73.0
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 2.9e-240 835.5 644 68.0
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 6.1e-238 827.8 657 67.9
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.5e-236 823.2 595 72.3
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.9e-231 806.2 868 54.1
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 8.8e-229 797.3 656 64.0
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 4.0e-221 771.9 691 58.8
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.7e-219 766.5 653 64.3
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 8.3e-219 764.2 701 60.3
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 3.6e-214 748.8 848 53.5
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.4e-205 720.3 659 58.7
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.3e-200 703.7 512 71.3
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.9e-200 702.2 499 74.5
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 5.6e-199 698.4 573 64.4
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.0e-192 677.6 665 55.6
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 6.6e-192 674.9 476 73.1
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 7.1e-178 628.2 493 69.6
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 5.1e-176 622.1 625 57.1
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 9.9e-172 607.8 586 56.0
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.8e-157 560.5 436 66.7
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 2.2e-142 510.4 442 61.8
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.7e-118 431.0 345 64.9
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 2.8e-118 430.3 464 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.2e-79 302.0 411 43.8
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 2.9e-78 297.4 438 43.6
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.8e-78 297.0 205 75.6
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.1e-77 295.4 237 61.2
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 9.2e-77 292.4 201 74.6
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 6.4e-70 269.6 180 75.0
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 1.1e-66 258.8 285 55.1
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.1e-65 254.6 251 59.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.1e-61 242.3 378 41.3
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.4e-61 241.9 169 72.2
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 7.9e-60 236.1 159 75.5
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.7e-44 184.5 170 60.6
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-43 179.9 441 33.1
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 2.1e-36 158.3 98 78.6
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.7e-36 157.9 91 82.4
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 1.0e-35 156.0 145 60.0
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.5e-34 152.1 147 54.4
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.1e-32 146.0 94 74.5
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 3.4e-31 141.0 104 65.4
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 2.2e-30 138.3 90 72.2
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 3.8e-30 137.5 93 74.2
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 1.4e-29 135.6 79 81.0
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.2e-29 134.0 113 61.9
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.8e-27 128.6 193 39.4
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 4.8e-25 120.6 83 73.5
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 8.2e-25 119.8 481 29.1
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 2.4e-24 118.2 165 42.4
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 5.9e-23 113.6 96 65.6
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 5.0e-22 110.5 84 67.9
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.0e-19 102.8 65 76.9
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.8e-19 102.1 90 62.2
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.5e-18 99.0 175 36.6
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 3.3e-18 97.8 67 76.1
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.2e-15 89.4 67 64.2
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 1.0e-14 86.3 50 82.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 1.0e-14 86.3 50 82.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 1.1e-13 82.8 61 68.9
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-13 80.9 62 64.5
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 7.2e-13 80.1 92 54.3
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.2e-12 79.3 50 74.0
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 8.2e-09 66.6 75 58.7
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 3.1e-08 64.7 49 63.3
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 5.3e-08 63.9 62 46.8


User provided reference genes

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