Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.2e-156 555.1 286 100.0
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 6.5e-133 477.6 286 85.3
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 2.1e-131 472.6 286 82.2
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 4.7e-131 471.5 286 84.6
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 6.1e-131 471.1 286 82.5
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 6.1e-131 471.1 284 83.8
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 4.0e-130 468.4 286 82.2
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 7.5e-129 464.2 284 81.7
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 7.5e-129 464.2 286 81.1
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 7.5e-129 464.2 286 81.1
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 1.8e-127 459.5 286 79.4
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.8e-127 459.5 286 80.1
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.8e-127 459.5 286 80.1
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 2.4e-127 459.1 286 78.3
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 5.4e-127 458.0 286 78.7
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.4e-127 458.0 286 80.1
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 5.4e-127 458.0 286 79.7
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 7.0e-127 457.6 286 79.0
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 7.0e-127 457.6 286 79.4
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 1.6e-126 456.4 286 79.7
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.7e-126 455.7 286 80.1
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.5e-126 454.9 286 79.7
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 5.9e-126 454.5 286 80.4
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 5.9e-126 454.5 286 81.1
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 7.7e-126 454.1 286 79.4
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.3e-125 453.4 288 80.2
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.3e-125 453.4 286 77.3
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 2.9e-125 452.2 286 78.3
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 8.6e-125 450.7 286 80.1
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 8.6e-125 450.7 286 78.7
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 3.3e-124 448.7 273 81.0
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.6e-124 448.0 286 79.0
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 1.2e-123 446.8 286 76.9
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 2.8e-123 445.7 286 77.3
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 4.7e-123 444.9 286 77.3
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 6.1e-123 444.5 286 76.2
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 8.0e-123 444.1 286 78.0
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 1.4e-122 443.4 286 76.6
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 1.8e-122 443.0 286 76.6
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 1.8e-122 443.0 286 76.6
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 3.0e-122 442.2 286 76.6
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 4.0e-122 441.8 286 76.2
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 8.9e-122 440.7 286 80.4
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 1.2e-121 440.3 286 76.2
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.2e-121 440.3 286 77.6
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 2.0e-121 439.5 286 76.9
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 2.0e-121 439.5 286 77.3
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 2.6e-121 439.1 286 75.5
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 3.4e-121 438.7 285 75.8
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 4.4e-121 438.3 286 75.9
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 4.4e-121 438.3 286 75.5
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 1.3e-120 436.8 286 75.5
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 1.7e-120 436.4 286 74.8
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 1.7e-120 436.4 285 75.1
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 2.2e-120 436.0 286 76.2
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 4.9e-120 434.9 286 74.8
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 6.4e-120 434.5 286 73.4
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 1.1e-119 433.7 286 74.5
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-119 433.7 286 75.9
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 3.2e-119 432.2 294 74.8
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 5.4e-119 431.4 286 75.9
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 7.0e-119 431.0 286 74.8
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 7.0e-119 431.0 286 76.2
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 9.2e-119 430.6 270 80.7
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 1.2e-118 430.3 286 75.9
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 1.2e-118 430.3 286 75.2
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.0e-118 429.5 290 74.5
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 3.5e-118 428.7 286 75.2
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 4.6e-118 428.3 286 74.5
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.0e-117 427.2 286 74.1
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.3e-117 426.0 281 76.2
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.3e-117 426.0 320 68.8
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 3.0e-117 425.6 287 75.3
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.9e-117 425.2 286 75.5
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 5.0e-117 424.9 282 75.9
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 5.0e-117 424.9 289 74.7
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 8.6e-117 424.1 297 71.4
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.9e-116 422.9 286 74.1
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 3.3e-116 422.2 286 72.7
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 4.3e-116 421.8 341 64.8
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 4.3e-116 421.8 270 77.4
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 5.6e-116 421.4 286 73.8
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 7.3e-116 421.0 286 73.8
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 9.5e-116 420.6 289 74.4
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 9.5e-116 420.6 289 74.4
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.6e-115 419.9 292 72.9
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 3.6e-115 418.7 286 74.8
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 8.0e-115 417.5 286 71.3
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 8.0e-115 417.5 286 71.3
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.0e-114 417.2 289 74.0
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.0e-114 417.2 290 72.1
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 2.3e-114 416.0 286 74.1
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 3.1e-114 415.6 289 74.4
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 4.0e-114 415.2 290 74.5
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 6.8e-114 414.5 286 73.8
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 6.8e-114 414.5 289 73.0
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 8.9e-114 414.1 290 74.5
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 8.9e-114 414.1 289 74.0
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.2e-113 413.7 286 74.1
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 1.2e-113 413.7 284 71.8
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 1.5e-113 413.3 290 73.8
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 7.5e-113 411.0 290 73.8
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 7.5e-113 411.0 290 73.1
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 7.5e-113 411.0 271 76.4
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 1.3e-112 410.2 286 72.7
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 4.9e-112 408.3 290 73.4
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 4.9e-112 408.3 270 76.3
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 6.4e-112 407.9 286 72.7
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.1e-111 407.1 285 73.0
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.9e-111 406.4 310 70.0
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 3.2e-111 405.6 286 72.4
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 9.2e-111 404.1 270 74.4
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 7.8e-110 401.0 280 73.9
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 7.8e-110 401.0 283 71.0
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 2.5e-108 396.0 287 71.4
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 3.3e-108 395.6 317 65.9
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 5.6e-108 394.8 285 69.8
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 5.6e-108 394.8 270 73.7
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.6e-107 393.3 328 62.5
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 2.1e-107 392.9 299 68.9
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 3.6e-107 392.1 286 69.6
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 1.1e-106 390.6 244 77.9
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 5.2e-106 388.3 275 72.7
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.0e-105 386.3 270 72.6
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 2.6e-105 386.0 287 68.3
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 4.4e-105 385.2 251 76.1
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 5.8e-105 384.8 286 70.3
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 4.6e-102 375.2 286 68.9
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 4.6e-102 375.2 286 68.9
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 3.0e-101 372.5 291 66.3
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 8.6e-101 370.9 275 70.5
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 2.5e-100 369.4 253 74.3
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 6.2e-99 364.8 286 67.1
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 5.8e-97 358.2 279 68.1
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 7.6e-97 357.8 287 66.2
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 2.4e-95 352.8 235 74.0
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 2.1e-94 349.7 341 58.1
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 7.8e-94 347.8 262 72.1
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.1e-92 344.0 217 78.8
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 3.1e-90 335.9 217 77.0
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.2e-90 335.1 283 62.2
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.7e-88 330.1 227 72.7
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 5.8e-81 305.1 252 65.5
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 1.7e-80 303.5 271 57.9
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 4.9e-80 302.0 287 58.2
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 2.4e-74 283.1 217 64.1
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 9.0e-74 281.2 284 57.0
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 5.5e-71 271.9 243 58.8
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 3.6e-54 216.1 176 61.9
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 1.1e-52 211.1 177 59.3
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.2e-51 206.8 284 48.2
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.1e-50 204.5 122 82.0
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.8e-50 203.8 217 58.1
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.8e-50 203.8 330 42.7
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 5.9e-49 198.7 176 63.1
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 4.2e-47 192.6 273 44.3
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 1.5e-44 184.1 124 70.2
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.4e-44 181.8 184 54.9
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 4.0e-29 132.9 85 71.8
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 2.8e-27 126.7 224 36.2
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.7e-25 118.6 164 49.4
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.9e-24 116.7 283 37.5
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 6.5e-24 115.5 124 50.8
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 4.7e-22 109.4 281 35.6
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.3e-19 101.3 94 56.4
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.8e-19 100.1 66 74.2
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.3e-19 98.6 65 72.3
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.9e-16 90.1 93 57.0
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.3e-11 72.4 47 74.5
TAR636G0763 Trochodendron aralioides HOM05D000008 ORTHO05D415803 4.3e-07 59.7 42 78.6


User provided reference genes

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