Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.4e-23 111.3 56 100.0
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.0e-23 109.8 56 98.2
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.3e-20 100.5 56 89.3
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.3e-20 100.5 56 89.3
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.0e-19 96.3 56 87.5
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.0e-17 91.7 55 83.6
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 6.0e-14 80.1 48 81.2
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 8.6e-13 76.3 56 73.2
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 3.3e-12 74.3 56 67.9
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 3.3e-12 74.3 56 67.9
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 4.3e-12 73.9 51 72.5
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 7.3e-12 73.2 44 81.8
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 7.3e-12 73.2 44 81.8
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 1.2e-11 72.4 51 70.6
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.2e-11 72.4 56 64.3
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.2e-11 72.4 56 64.3
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 1.2e-11 72.4 56 64.3
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 1.2e-11 72.4 55 65.5
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 1.2e-11 72.4 55 65.5
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 1.6e-11 72.0 53 69.8
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 1.6e-11 72.0 55 63.6
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 2.1e-11 71.6 46 73.9
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.1e-11 71.6 56 69.6
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 2.1e-11 71.6 55 65.5
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 2.8e-11 71.2 54 66.7
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 3.6e-11 70.9 51 70.6
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 3.6e-11 70.9 56 67.9
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 3.6e-11 70.9 56 62.5
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 3.6e-11 70.9 56 66.1
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 3.6e-11 70.9 56 66.1
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 4.7e-11 70.5 44 75.0
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 4.7e-11 70.5 56 66.1
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 4.7e-11 70.5 56 66.1
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 4.7e-11 70.5 59 62.7
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 4.7e-11 70.5 58 63.8
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 4.7e-11 70.5 51 64.7
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 4.7e-11 70.5 56 66.1
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 6.2e-11 70.1 54 70.4
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 6.2e-11 70.1 59 67.8
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 6.2e-11 70.1 51 68.6
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 8.0e-11 69.7 46 71.7
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 8.0e-11 69.7 54 68.5
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 8.0e-11 69.7 55 63.6
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 8.0e-11 69.7 56 62.5
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 8.0e-11 69.7 55 65.5
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 1.1e-10 69.3 42 76.2
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 1.1e-10 69.3 50 68.0
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 1.4e-10 68.9 55 63.6
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.4e-10 68.9 56 60.7
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 1.4e-10 68.9 44 77.3
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.4e-10 68.9 56 62.5
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 1.8e-10 68.6 51 66.7
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.8e-10 68.6 56 62.5
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 1.8e-10 68.6 56 62.5
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 2.3e-10 68.2 48 68.8
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 2.3e-10 68.2 59 61.0
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 3.1e-10 67.8 59 59.3
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 3.1e-10 67.8 62 58.1
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 4.0e-10 67.4 52 59.6
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 4.0e-10 67.4 53 66.0
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 4.0e-10 67.4 54 61.1
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 4.0e-10 67.4 54 61.1
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.0e-10 67.4 40 82.5
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 5.2e-10 67.0 51 66.7
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 5.2e-10 67.0 58 60.3
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 5.2e-10 67.0 44 70.5
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 5.2e-10 67.0 44 77.3
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 8.9e-10 66.2 44 70.5
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 8.9e-10 66.2 56 60.7
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 8.9e-10 66.2 47 70.2
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 8.9e-10 66.2 61 59.0
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 8.9e-10 66.2 44 70.5
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.2e-09 65.9 56 60.7
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 1.5e-09 65.5 46 58.7
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 1.5e-09 65.5 49 67.3
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.5e-09 65.5 40 80.0
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 2.0e-09 65.1 54 59.3
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 2.0e-09 65.1 54 59.3
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 2.6e-09 64.7 57 59.6
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 4.4e-09 63.9 43 69.8
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 4.4e-09 63.9 58 58.6
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 4.4e-09 63.9 51 60.8
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 4.4e-09 63.9 57 59.6
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 4.4e-09 63.9 47 68.1
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 4.4e-09 63.9 47 68.1
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 5.8e-09 63.5 59 52.5
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 5.8e-09 63.5 56 58.9
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 1.7e-08 62.0 55 60.0
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.2e-08 61.6 43 67.4
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 2.9e-08 61.2 42 73.8
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 2.9e-08 61.2 55 56.4
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 3.7e-08 60.8 59 54.2
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 3.7e-08 60.8 45 71.1
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 4.9e-08 60.5 42 69.0
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 4.9e-08 60.5 47 66.0
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 8.3e-08 59.7 45 71.1
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 8.3e-08 59.7 44 63.6
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.1e-07 59.3 59 57.6
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 1.4e-07 58.9 58 55.2
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.9e-07 58.5 43 65.1
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 7.0e-07 56.6 42 64.3
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 9.2e-07 56.2 52 53.8
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 9.2e-07 56.2 55 56.4
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 1.2e-06 55.8 42 69.0
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 1.6e-06 55.5 42 61.9
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 2.1e-06 55.1 46 56.5
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 2.7e-06 54.7 42 59.5
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 3.5e-06 54.3 36 72.2
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 4.6e-06 53.9 57 49.1
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 6.0e-06 53.5 58 53.4


User provided reference genes

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