Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 2.4e-105 386.0 266 100.0
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 2.1e-72 276.6 281 76.9
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 7.8e-72 274.6 267 79.8
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 1.0e-71 274.2 285 74.0
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 1.3e-71 273.9 280 75.7
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 3.9e-71 272.3 278 77.7
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 5.1e-71 271.9 280 77.5
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 1.5e-70 270.4 271 79.0
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 1.9e-70 270.0 270 78.5
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 2.5e-70 269.6 284 75.7
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 2.5e-70 269.6 270 79.6
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 5.6e-70 268.5 268 76.5
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 9.6e-70 267.7 270 75.9
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 9.6e-70 267.7 267 78.7
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 2.1e-69 266.5 267 78.7
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 2.8e-69 266.2 273 78.4
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 2.8e-69 266.2 268 77.2
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 2.8e-69 266.2 280 75.4
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 3.6e-69 265.8 267 76.4
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 4.7e-69 265.4 311 56.6
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 6.2e-69 265.0 269 78.8
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.4e-68 263.8 264 70.8
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 4.0e-68 262.3 278 77.3
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 4.0e-68 262.3 279 77.4
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 2.6e-67 259.6 268 75.0
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 2.6e-67 259.6 273 77.3
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 3.4e-67 259.2 287 73.5
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 9.9e-67 257.7 281 76.2
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 1.3e-66 257.3 266 77.4
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 1.3e-66 257.3 269 75.8
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 1.3e-66 257.3 269 75.8
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 1.7e-66 256.9 288 73.6
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.7e-66 256.9 279 73.1
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 4.9e-66 255.4 270 76.3
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 4.9e-66 255.4 276 76.1
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 1.4e-65 253.8 281 74.7
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 2.4e-65 253.1 278 73.4
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 2.4e-65 253.1 273 76.2
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 3.2e-65 252.7 280 74.3
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 3.2e-65 252.7 283 74.2
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 3.2e-65 252.7 280 71.8
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 3.2e-65 252.7 281 74.0
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 4.2e-65 252.3 272 66.9
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 4.2e-65 252.3 280 74.3
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 1.2e-64 250.8 219 86.3
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 1.6e-64 250.4 290 62.8
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 2.1e-64 250.0 280 74.3
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 2.1e-64 250.0 279 71.3
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 2.1e-64 250.0 275 74.2
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 3.5e-64 249.2 281 73.3
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 3.5e-64 249.2 269 73.6
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 6.0e-64 248.4 282 75.2
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 6.0e-64 248.4 281 74.4
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 7.8e-64 248.1 281 74.4
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 7.8e-64 248.1 266 74.8
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.0e-63 247.7 283 71.7
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 1.0e-63 247.7 282 75.2
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 1.7e-63 246.9 310 70.0
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 5.1e-63 245.4 284 71.5
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 1.1e-62 244.2 272 73.9
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.1e-62 244.2 288 67.4
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 1.9e-62 243.4 281 71.5
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 1.9e-62 243.4 250 63.6
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.5e-62 243.0 295 71.9
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.5e-62 243.0 295 71.9
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 7.3e-62 241.5 281 71.5
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 9.6e-62 241.1 281 70.8
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 9.6e-62 241.1 283 73.9
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.3e-61 240.7 288 67.4
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.3e-61 240.7 273 72.5
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 3.6e-61 239.2 282 74.1
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 4.8e-61 238.8 215 76.3
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 1.1e-60 237.7 271 72.7
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 2.4e-60 236.5 271 61.3
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 2.4e-60 236.5 221 85.5
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 3.1e-60 236.1 285 64.2
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 6.9e-60 235.0 196 89.8
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 9.0e-60 234.6 265 72.1
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 4.5e-59 232.3 364 50.3
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.8e-59 231.9 255 66.3
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.5e-54 217.2 213 82.6
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 2.1e-53 213.4 196 85.7
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 2.8e-53 213.0 229 66.4
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.4e-52 210.7 193 77.7
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.3e-50 204.1 183 85.2
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 1.7e-50 203.8 233 63.9
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 2.9e-50 203.0 216 66.7
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.3e-44 182.2 218 55.0
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 5.3e-44 182.2 234 49.1
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 3.4e-43 179.5 211 70.6
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 2.3e-39 166.8 86 90.7
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 3.9e-39 166.0 88 89.8
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 6.7e-39 165.2 85 90.6
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 4.3e-38 162.5 88 89.8
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 2.8e-37 159.8 85 87.1
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.4e-36 157.5 88 85.2
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.4e-36 157.5 88 85.2
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.5e-35 154.1 211 76.3
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 2.0e-35 153.7 85 84.7
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 3.4e-35 152.9 117 68.4
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 4.2e-33 146.0 187 54.5
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 2.6e-27 126.7 177 68.4
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 7.7e-27 125.2 120 60.8
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 1.0e-26 124.8 204 70.6
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 3.2e-25 119.8 143 62.2
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 2.3e-23 113.6 68 82.4
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 1.4e-17 94.4 59 78.0
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 8.0e-16 88.6 181 48.6
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.3e-13 81.3 55 69.1
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.8e-12 77.4 45 80.0
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.3e-10 71.2 88 52.3
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 1.5e-09 67.8 44 68.2
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 5.2e-07 59.3 40 70.0
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 3.3e-06 56.6 52 55.8


User provided reference genes

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