Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 4.7e-217 757.7 410 100.0
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.1e-109 401.0 417 55.6
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.4e-107 394.0 413 54.7
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 3.0e-107 392.9 413 56.2
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 1.6e-103 380.6 406 58.9
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.7e-103 379.8 415 53.7
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 5.5e-101 372.1 428 54.0
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 6.1e-100 368.6 418 52.9
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.2e-98 364.4 415 53.5
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.5e-98 364.0 415 53.0
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 2.9e-97 359.8 419 52.3
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 2.4e-96 356.7 442 51.1
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 3.2e-96 356.3 421 52.5
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 7.0e-96 355.1 416 52.6
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 8.6e-94 348.2 312 65.1
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.6e-92 342.8 423 50.6
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 4.7e-92 342.4 419 50.4
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 2.3e-91 340.1 388 51.8
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 5.2e-91 339.0 415 48.9
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 8.9e-91 338.2 414 50.2
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 4.9e-89 332.4 383 50.9
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 6.4e-89 332.0 415 48.2
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 1.1e-88 331.3 386 51.3
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 7.0e-88 328.6 416 50.0
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.3e-86 324.3 473 45.2
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 3.9e-86 322.8 417 48.7
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.6e-84 317.4 427 46.6
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.6e-84 316.2 473 44.4
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 6.2e-84 315.5 473 43.8
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 1.1e-83 314.7 414 50.2
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.1e-83 314.7 425 45.4
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 5.2e-83 312.4 398 47.5
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 6.8e-83 312.0 465 44.1
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.9e-83 311.6 465 43.7
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 8.9e-83 311.6 379 47.2
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.9e-81 306.6 465 43.4
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 3.7e-81 306.2 342 50.9
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.6e-79 300.8 429 45.9
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 3.5e-79 299.7 415 48.2
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.6e-76 290.8 457 41.6
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 6.8e-75 285.4 419 44.6
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 8.9e-75 285.0 457 41.1
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.7e-73 280.8 421 43.7
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 3.7e-73 279.6 473 40.8
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 4.9e-73 279.3 408 46.3
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 8.4e-73 278.5 415 47.0
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 5.4e-72 275.8 368 47.0
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 5.4e-72 275.8 448 40.6
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 2.1e-71 273.9 353 51.8
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.0e-71 272.3 282 57.8
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 7.8e-71 271.9 414 45.4
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 1.7e-70 270.8 412 42.0
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 1.7e-70 270.8 424 43.4
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 5.1e-70 269.2 337 51.9
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 8.1e-68 261.9 431 40.8
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 1.1e-67 261.5 445 40.2
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.1e-67 261.5 421 43.9
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 2.4e-67 260.4 423 40.7
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 1.7e-65 254.2 467 39.0
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 1.7e-65 254.2 431 41.5
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 8.4e-65 251.9 462 38.1
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 7.1e-64 248.8 417 40.0
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 9.3e-64 248.4 468 39.7
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 9.3e-64 248.4 423 40.4
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.6e-63 247.7 408 41.4
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 3.5e-63 246.5 293 49.8
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.0e-62 245.0 383 40.2
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.7e-62 244.2 390 44.6
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 6.6e-62 242.3 380 42.4
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.9e-61 240.7 261 56.3
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.9e-61 240.7 414 40.6
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 7.3e-61 238.8 268 51.9
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 2.8e-60 236.9 447 40.3
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.1e-59 235.0 380 41.3
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 3.4e-58 229.9 401 40.9
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 3.4e-58 229.9 406 39.9
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 6.4e-57 225.7 346 43.1
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 8.4e-57 225.3 468 38.0
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 1.1e-56 224.9 266 51.9
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.1e-56 224.9 398 41.2
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.9e-56 224.2 259 50.2
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 4.2e-56 223.0 405 38.8
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.7e-55 220.3 290 49.0
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 3.9e-54 216.5 416 37.3
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.9e-53 214.2 396 40.2
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 4.3e-53 213.0 240 52.1
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.3e-52 211.5 481 33.7
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 2.8e-52 210.3 437 35.7
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 4.8e-52 209.5 243 52.7
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 6.2e-52 209.1 479 34.0
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.4e-51 208.0 436 34.9
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 3.4e-50 203.4 417 34.3
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.9e-49 200.3 218 55.0
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 3.8e-49 199.9 431 35.0
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 4.9e-49 199.5 421 34.0
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 8.4e-49 198.7 387 37.5
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.9e-48 197.6 364 39.0
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 4.2e-48 196.4 445 33.7
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.6e-47 194.5 467 35.3
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 1.0e-46 191.8 446 32.7
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 9.6e-45 185.3 279 45.5
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 9.6e-45 185.3 195 54.9
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.8e-44 183.7 321 38.6
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 1.4e-43 181.4 405 34.3
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 4.0e-43 179.9 267 44.6
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 2.5e-40 170.6 259 42.5
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.0e-34 151.0 427 31.9
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 7.6e-34 149.1 464 30.4
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.9e-33 147.1 324 33.0
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.5e-33 146.0 255 41.6
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 6.7e-30 136.0 320 32.2
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.1e-29 135.2 158 49.4
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 5.7e-29 132.9 318 31.8
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 9.0e-27 125.6 115 62.6
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 9.0e-27 125.6 320 33.1
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 3.6e-23 113.6 258 34.1
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.0e-22 112.1 129 52.7
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 9.7e-21 105.5 90 60.0
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.3e-20 105.1 139 46.0
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 5.3e-19 99.8 111 50.5
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.1e-16 92.0 87 54.0
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.2e-15 88.6 62 72.6
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.2e-15 88.6 123 42.3
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.0e-14 85.5 131 38.2
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.5e-13 81.6 72 58.3
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.5e-13 81.6 69 56.5
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.0e-13 81.3 132 37.9
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 7.4e-13 79.3 71 59.2
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 9.7e-13 79.0 414 24.4
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 1.7e-12 78.2 158 34.2
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 4.8e-12 76.6 59 67.8
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 2.4e-11 74.3 141 41.1
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 3.1e-11 73.9 102 38.2
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 3.1e-11 73.9 83 43.4
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 2.6e-10 70.9 65 60.0
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.5e-10 70.1 63 60.3
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 8.5e-09 65.9 64 57.8


User provided reference genes

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