Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.0e-105 387.1 254 100.0
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 6.5e-68 261.5 254 76.0
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 7.2e-67 258.1 254 76.4
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 1.2e-66 257.3 254 76.4
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 2.1e-66 256.5 254 76.4
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 2.7e-66 256.1 254 76.0
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 4.7e-66 255.4 254 77.6
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 1.4e-65 253.8 250 76.4
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 4.0e-65 252.3 253 75.5
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.5e-64 250.4 255 76.5
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 2.6e-64 249.6 254 76.4
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 9.8e-64 247.7 254 75.6
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 2.2e-63 246.5 254 76.0
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 1.1e-62 244.2 254 75.6
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.1e-62 244.2 254 75.6
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 2.4e-62 243.0 254 75.2
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 7.0e-62 241.5 254 74.0
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 2.7e-61 239.6 254 73.6
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-61 239.6 254 74.0
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 2.7e-61 239.6 254 75.2
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 3.5e-61 239.2 254 74.0
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 5.9e-61 238.4 254 74.0
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.3e-60 237.3 254 71.7
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 2.3e-60 236.5 256 72.3
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.9e-60 236.1 259 53.7
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 5.0e-60 235.3 256 72.7
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 6.6e-60 235.0 254 72.0
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.1e-59 234.2 241 77.6
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 1.5e-59 233.8 254 72.8
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 1.5e-59 233.8 258 74.0
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 1.9e-59 233.4 253 73.1
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 3.3e-59 232.6 265 61.9
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 4.3e-59 232.3 254 71.3
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 7.3e-59 231.5 256 73.8
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.6e-58 230.3 254 72.8
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.6e-58 230.3 191 90.6
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 1.6e-58 230.3 254 71.7
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 2.1e-58 229.9 253 74.3
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.1e-58 229.9 253 74.3
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 2.8e-58 229.6 255 72.2
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.6e-58 229.2 253 74.3
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 6.1e-58 228.4 254 71.3
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.0e-57 227.6 254 73.2
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-57 226.5 191 90.6
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.3e-57 226.5 191 90.6
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 3.0e-57 226.1 199 85.9
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 5.2e-57 225.3 193 88.6
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.2e-56 224.2 251 72.9
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.4e-56 222.2 254 72.0
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 7.5e-56 221.5 175 68.6
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 7.5e-56 221.5 198 84.3
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-55 220.7 256 73.0
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 1.7e-55 220.3 247 72.9
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 2.2e-55 219.9 186 87.6
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 2.2e-55 219.9 256 71.5
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 2.2e-55 219.9 254 71.3
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 3.7e-55 219.2 201 83.6
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.4e-55 218.4 259 51.7
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-54 217.6 191 72.3
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.4e-54 215.3 254 69.7
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 5.4e-54 215.3 279 55.9
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 5.4e-54 215.3 255 70.6
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 1.2e-53 214.2 255 71.0
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 1.2e-53 214.2 252 71.8
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 1.2e-53 214.2 257 72.4
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 2.0e-53 213.4 254 68.5
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 2.0e-53 213.4 255 70.6
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 3.5e-53 212.6 255 69.4
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 7.8e-53 211.5 184 90.8
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 1.0e-52 211.1 254 59.8
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 1.0e-52 211.1 175 65.1
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 1.3e-52 210.7 255 69.4
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.7e-52 210.3 191 85.9
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 3.0e-52 209.5 255 70.6
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 2.5e-51 206.5 189 85.7
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 2.5e-51 206.5 186 87.1
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 3.3e-51 206.1 257 70.0
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 4.3e-51 205.7 255 71.0
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 7.3e-51 204.9 185 85.9
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 1.2e-50 204.1 255 69.4
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 4.7e-50 202.2 254 67.7
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 4.7e-50 202.2 185 85.9
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 8.0e-50 201.4 254 67.7
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 8.0e-50 201.4 224 72.8
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 1.0e-49 201.1 231 69.7
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.4e-49 200.7 254 68.9
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.4e-49 200.7 180 87.8
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 4.0e-49 199.1 230 72.2
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 5.2e-49 198.7 197 80.2
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 6.8e-49 198.4 186 85.5
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 1.2e-48 197.6 192 82.3
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 7.5e-48 194.9 254 65.0
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 7.5e-48 194.9 242 68.6
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 7.5e-48 194.9 242 68.6
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 9.8e-48 194.5 192 81.2
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 1.3e-47 194.1 201 78.6
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 6.4e-47 191.8 191 80.6
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 1.1e-46 191.0 210 75.7
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 2.4e-46 189.9 201 77.1
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 5.4e-46 188.7 200 78.5
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 5.4e-46 188.7 254 64.2
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 7.0e-46 188.3 226 50.0
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 7.0e-46 188.3 226 50.0
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.2e-45 187.6 206 75.7
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.5e-45 186.0 254 50.4
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 1.0e-44 184.5 105 83.8
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 3.9e-44 182.6 192 78.1
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.6e-44 181.8 112 82.1
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.6e-44 181.8 112 82.1
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.6e-44 181.8 112 82.1
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.3e-43 179.1 112 80.4
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.6e-43 178.7 142 65.5
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 7.3e-43 178.3 187 80.2
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 1.2e-42 177.6 254 65.4
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-42 177.6 112 80.4
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.8e-42 176.4 254 49.6
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.6e-42 176.0 154 63.6
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 8.1e-42 174.9 157 93.0
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.1e-41 174.5 158 91.1
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.2e-40 171.0 197 75.1
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 5.8e-40 168.7 193 72.5
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 7.5e-40 168.3 166 85.5
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 8.6e-36 154.8 110 69.1
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.1e-33 147.9 194 64.9
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 8.9e-33 144.8 156 82.1
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.4e-32 142.9 77 88.3
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 9.9e-32 141.4 106 67.0
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.7e-21 106.7 138 46.4
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.7e-15 87.4 116 82.8
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 1.9e-11 73.9 180 40.0
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 5.6e-11 72.4 97 44.3
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.3e-09 65.9 97 43.3


User provided reference genes

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