Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 7.3e-232 807.0 443 100.0
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.4e-86 322.4 459 54.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.1e-75 288.1 547 43.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.9e-71 273.5 586 38.2
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-70 271.6 587 38.7
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.1e-68 262.7 591 38.9
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 8.7e-68 261.9 593 41.0
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.3e-66 258.1 521 44.1
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.3e-66 258.1 405 50.4
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.8e-65 254.2 577 37.3
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 6.9e-65 252.3 589 37.4
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 3.4e-64 250.0 603 35.5
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 1.7e-63 247.7 617 37.3
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 3.2e-62 243.4 600 35.0
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 3.2e-62 243.4 540 39.8
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 2.0e-59 234.2 582 38.3
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 2.5e-59 233.8 383 45.7
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.2e-58 230.7 391 42.2
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 3.7e-58 229.9 488 40.0
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.9e-57 225.7 385 42.3
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 9.1e-57 225.3 366 43.7
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.5e-56 224.6 430 41.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.7e-55 221.1 337 44.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.5e-55 218.8 399 40.6
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.1e-54 218.4 595 34.5
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 4.2e-54 216.5 360 43.1
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 9.4e-54 215.3 323 45.8
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.7e-53 213.8 352 45.7
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 4.7e-53 213.0 339 44.2
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.0e-52 211.8 439 40.5
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.3e-52 210.7 345 45.8
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 6.7e-52 209.1 489 38.0
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 5.7e-51 206.1 605 36.4
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 9.7e-51 205.3 629 34.8
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.7e-50 204.5 482 36.1
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.8e-49 201.1 379 41.2
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 2.6e-48 197.2 484 36.4
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.7e-47 194.5 718 33.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.6e-45 188.0 372 39.2
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 8.0e-45 185.7 414 37.4
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.7e-44 182.6 437 36.4
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.8e-44 182.2 458 35.6
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 2.2e-42 177.6 660 31.5
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.8e-42 177.2 509 34.4
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 8.2e-42 175.6 601 35.3
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.1e-41 175.3 667 33.0
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.1e-41 173.7 445 34.6
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 7.0e-41 172.6 488 35.7
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.6e-40 170.6 318 43.1
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.3e-39 168.3 603 30.7
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.7e-39 167.9 530 35.3
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.9e-39 167.2 560 33.4
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 3.8e-39 166.8 590 29.8
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 3.8e-39 166.8 545 33.8
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.9e-38 164.5 404 34.7
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 3.2e-38 163.7 351 36.5
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 5.5e-38 162.9 541 32.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 9.4e-38 162.2 381 39.6
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-37 161.8 588 32.8
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.6e-37 161.4 528 36.4
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 6.1e-37 159.5 451 33.5
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.0e-36 158.7 429 35.0
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.4e-36 158.3 441 35.6
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.5e-35 154.8 593 32.2
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.5e-35 154.8 593 32.2
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 3.4e-35 153.7 436 33.5
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.7e-34 151.4 521 33.4
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 3.7e-34 150.2 557 30.3
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.8e-34 149.8 626 32.3
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 6.3e-34 149.4 269 43.9
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 8.3e-34 149.1 418 32.1
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.1e-33 146.7 645 29.6
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.1e-33 146.7 392 34.9
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.4e-33 146.4 437 34.6
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 5.4e-33 146.4 444 31.8
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 7.0e-33 146.0 401 34.4
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 9.1e-33 145.6 436 33.3
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 2.0e-32 144.4 541 31.8
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.7e-32 144.1 416 31.2
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 2.7e-32 144.1 526 32.7
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 7.7e-32 142.5 357 35.9
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 2.9e-31 140.6 370 33.5
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.1e-30 138.7 546 31.5
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.5e-30 138.3 324 38.3
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.9e-30 137.9 367 33.2
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 3.2e-30 137.1 436 34.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 4.2e-30 136.7 554 30.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.2e-30 136.7 619 29.9
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 5.5e-30 136.3 552 29.9
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-29 135.2 573 29.7
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.2e-29 135.2 568 29.0
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.2e-29 135.2 553 29.7
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.2e-29 135.2 384 34.1
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.6e-29 134.8 440 30.7
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.6e-29 134.8 327 34.6
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.7e-29 133.3 398 32.2
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.7e-29 133.3 502 34.1
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 6.1e-29 132.9 266 38.3
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 2.3e-28 131.0 498 33.5
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 4.0e-28 130.2 515 32.2
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 4.0e-28 130.2 341 35.2
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 8.8e-28 129.0 287 36.6
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.4e-27 127.1 611 27.8
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 5.7e-27 126.3 357 34.7
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 7.5e-27 125.9 377 33.4
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 7.5e-27 125.9 426 31.0
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.3e-26 125.2 535 32.7
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 6.3e-26 122.9 565 29.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-25 122.1 596 27.9
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 9.1e-25 119.0 271 37.6
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.0e-23 113.2 612 26.0
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.0e-23 113.2 218 40.4
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.1e-22 112.1 616 26.6
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.9e-22 111.3 278 36.3
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 4.3e-22 110.2 875 24.0
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 1.2e-21 108.6 296 34.1
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.6e-21 107.1 570 27.7
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.0e-20 105.5 348 30.7
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.0e-20 105.5 257 33.1
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 1.0e-20 105.5 473 29.6
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.4e-20 105.1 254 37.4
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.8e-20 104.8 233 40.3
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 4.0e-20 103.6 401 30.9
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 8.9e-20 102.4 258 37.6
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-19 102.1 190 41.6
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.2e-19 102.1 191 41.4
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.2e-19 102.1 191 41.4
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 2.0e-19 101.3 233 39.1
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.4e-19 100.5 307 29.0
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 4.4e-19 100.1 505 28.7
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.3e-18 98.6 284 32.7
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 1.7e-18 98.2 300 31.0
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 2.2e-18 97.8 664 25.5
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 2.2e-18 97.8 358 31.0
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.7e-18 97.1 578 25.8
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.9e-18 96.7 688 25.4
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-17 95.1 481 28.3
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 1.4e-17 95.1 368 29.6
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.6e-16 91.7 239 36.0
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 4.6e-16 90.1 159 41.5
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.9e-16 89.7 307 28.0
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 7.8e-16 89.4 175 39.4
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.3e-15 88.6 159 40.9
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 2.3e-15 87.8 175 38.9
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 3.0e-15 87.4 248 29.8
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 3.9e-15 87.0 494 26.5
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 5.0e-15 86.7 311 28.3
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 1.9e-14 84.7 206 35.4
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.9e-14 84.7 222 36.9
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 2.5e-14 84.3 311 29.3
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 3.3e-14 84.0 234 32.5
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 4.3e-14 83.6 464 28.0
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 5.6e-14 83.2 180 40.6
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 7.3e-14 82.8 300 32.7
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 3.6e-13 80.5 659 26.1
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 6.2e-13 79.7 410 26.3
MBI18_g09027_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 5.2e-12 76.6 282 30.9
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 8.9e-12 75.9 203 36.5
MBI17_g21975_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 3.4e-11 73.9 279 31.9
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 9.8e-11 72.4 466 30.0
Solyc01g009660.3 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.2e-10 71.2 300 25.3
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 2.2e-10 71.2 289 30.1
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 4.9e-10 70.1 105 42.9
CAN.G166.11 Capsicum annuum HOM05D004189 ORTHO05D004092 1.9e-09 68.2 144 38.2
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.4e-09 67.8 315 31.4
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.5e-08 63.9 222 31.5
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.0e-08 63.2 112 37.5
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 6.0e-08 63.2 124 37.1
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 3.9e-07 60.5 127 34.6
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.1e-06 58.9 277 28.2
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 3.3e-06 57.4 102 39.2
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 7.3e-06 56.2 143 32.2
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 9.5e-06 55.8 337 27.3


User provided reference genes

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