Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 9.6e-228 793.1 390 100.0
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.1e-186 655.2 369 87.8
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 5.2e-181 637.9 374 84.5
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.1e-180 636.7 372 84.1
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.8e-179 631.3 369 84.3
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.8e-176 621.7 366 84.4
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.2e-171 605.9 365 83.0
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.4e-170 602.4 367 81.5
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 7.7e-169 597.4 362 81.2
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 6.5e-168 594.3 366 80.3
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 4.2e-167 591.7 367 81.2
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 7.2e-167 590.9 368 80.2
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 9.4e-167 590.5 365 81.6
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.6e-166 589.7 369 80.2
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.1e-166 589.3 367 80.4
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.0e-165 587.0 364 79.1
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 5.2e-165 584.7 365 79.5
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 6.8e-165 584.3 368 79.6
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.5e-164 583.2 367 79.3
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 7.5e-164 580.9 365 79.2
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.3e-163 580.1 369 78.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.7e-163 579.7 368 79.3
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 3.7e-163 578.6 369 78.0
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 6.3e-163 577.8 368 78.8
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 1.1e-162 577.0 365 80.5
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.8e-162 576.2 364 79.1
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 5.4e-162 574.7 360 81.1
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 7.0e-162 574.3 367 77.7
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.2e-161 573.5 372 80.1
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.6e-161 573.2 368 79.1
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 3.5e-161 572.0 368 78.5
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.7e-160 569.7 368 78.5
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.7e-160 569.7 368 78.8
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.3e-160 569.3 368 78.3
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.3e-160 569.3 362 78.2
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.8e-160 568.5 365 77.5
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 9.5e-159 563.9 363 77.7
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 2.1e-158 562.8 364 76.6
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.8e-158 562.4 367 77.1
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 4.7e-158 561.6 367 76.8
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 6.1e-158 561.2 365 78.4
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.4e-157 560.1 368 77.2
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.8e-157 559.7 365 78.1
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.0e-157 558.9 365 78.1
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 4.0e-157 558.5 360 78.6
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 5.2e-157 558.1 365 78.4
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 6.8e-157 557.8 368 77.2
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.2e-156 557.0 364 79.4
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.5e-156 556.6 367 76.3
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.5e-156 556.6 366 77.6
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.7e-156 554.7 365 77.5
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 7.5e-156 554.3 372 77.4
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 9.8e-156 553.9 370 76.8
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.3e-155 553.5 362 77.3
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.7e-155 553.1 361 79.2
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.7e-155 552.0 368 76.1
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 3.7e-155 552.0 369 74.5
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 4.9e-155 551.6 370 75.4
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 8.3e-155 550.8 377 75.9
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.2e-154 548.9 365 75.1
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.4e-154 548.1 365 77.0
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.2e-153 547.0 368 76.6
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 3.5e-153 545.4 436 67.9
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 5.9e-153 544.7 366 74.6
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 7.8e-153 544.3 357 77.3
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.3e-152 543.5 376 76.1
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.3e-152 543.5 361 75.9
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 8.6e-152 540.8 368 75.5
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.3e-151 538.9 364 75.0
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 5.6e-151 538.1 363 74.1
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 2.8e-150 535.8 365 74.5
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.1e-149 532.3 390 71.5
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.2e-148 530.4 368 74.2
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.2e-148 530.4 368 74.5
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 2.6e-148 529.3 366 73.2
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.4e-148 528.5 363 73.0
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.7e-147 526.6 384 73.4
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 4.9e-147 525.0 364 74.2
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 4.9e-147 525.0 366 72.7
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 6.4e-147 524.6 364 73.9
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.0e-144 517.3 366 71.9
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 6.6e-144 514.6 366 71.6
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 3.3e-143 512.3 364 75.3
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.1e-142 509.6 360 72.8
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.6e-142 508.8 368 70.9
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 4.7e-142 508.4 368 71.2
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.4e-141 506.9 365 71.0
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 5.2e-141 505.0 320 80.0
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.9e-138 496.5 365 71.5
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.4e-138 496.1 318 79.9
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 3.2e-138 495.7 367 70.8
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.9e-135 486.5 359 71.3
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.9e-135 486.5 359 71.3
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.1e-133 480.7 376 66.0
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.2e-132 477.2 380 67.1
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.6e-132 476.1 369 66.1
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 4.9e-131 471.9 369 66.1
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.4e-130 470.3 336 73.8
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.9e-130 469.9 345 72.2
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.4e-130 469.5 318 75.5
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 5.4e-130 468.4 319 74.6
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.4e-130 468.4 369 66.9
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.5e-127 459.5 359 68.8
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.5e-124 450.3 388 60.3
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 9.9e-124 447.6 362 65.5
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 7.1e-122 441.4 371 63.6
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.2e-121 440.7 325 72.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.1e-121 439.9 325 72.0
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.3e-120 437.2 297 76.4
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.1e-120 435.3 358 65.6
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 6.2e-118 428.3 358 65.1
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.3e-117 425.2 363 63.4
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.3e-110 404.1 369 57.2
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.8e-110 402.9 333 64.9
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 8.1e-110 401.4 310 70.6
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 8.1e-110 401.4 383 58.2
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.6e-105 385.6 293 67.6
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.6e-105 385.6 386 53.9
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 2.3e-104 383.3 382 55.8
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.3e-99 367.5 390 51.5
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.5e-97 359.4 324 62.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.3e-96 357.5 294 68.0
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 3.7e-94 349.4 361 52.1
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 9.0e-93 344.7 332 59.9
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.2e-90 336.3 336 57.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.1e-87 327.8 189 86.2
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 6.3e-86 322.0 382 48.4
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 5.5e-66 255.8 399 40.9
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.1e-63 248.1 140 86.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.7e-60 236.9 212 64.6
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.2e-59 233.8 115 93.0
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.3e-48 197.2 193 58.5
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 2.1e-41 174.1 281 36.3
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.9e-34 151.0 194 41.8
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 3.1e-32 143.7 207 41.1
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.3e-27 128.3 147 53.7
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.7e-19 101.3 83 65.1
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.3e-18 96.7 219 36.5
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 9.5e-18 95.5 65 73.8
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.4e-15 86.7 96 49.0
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 9.9e-15 85.5 207 29.0
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 3.8e-14 83.6 60 68.3
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.4e-13 80.9 51 70.6
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.8e-07 59.7 51 66.7
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 8.4e-06 55.8 55 49.1


User provided reference genes

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