Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0650 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.1e-119 433.3 221 100.0
PGR083G1804 Punica granatum HOM05D005860 ORTHO05D006977 2.0e-49 199.9 304 41.4
Nn4g22386 Nelumbo nucifera HOM05D005860 ORTHO05D006977 2.5e-47 193.0 301 42.9
QL02p072028 Quercus lobata HOM05D005860 ORTHO05D006977 2.5e-39 166.4 297 38.0
TAR622G0256 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.2e-38 164.1 300 38.7
CDE09G0687 Ceratophyllum demersum HOM05D005860 ORTHO05D006977 1.0e-37 161.0 264 39.8
CiPaw.04G034700 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.8e-37 160.2 297 37.7
Glyma.19G075100 Glycine max HOM05D005860 ORTHO05D006977 5.7e-36 155.2 298 36.9
TAR629G2046 Trochodendron aralioides HOM05D005860 ORTHO05D006977 7.8e-33 144.8 308 36.4
Cc02_g00900 Coffea canephora HOM05D005860 ORTHO05D006977 2.5e-31 139.8 317 33.4
Glyma.05G075600 Glycine max HOM05D005860 ORTHO05D006977 2.1e-30 136.7 297 34.3
Phvul.004G055500 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 1.2e-28 131.0 306 34.0
GSVIVG01001819001 Vitis vinifera HOM05D005860 ORTHO05D006977 5.8e-28 128.6 288 34.0
Eucgr.J02311 Eucalyptus grandis HOM05D005860 ORTHO05D006977 1.7e-27 127.1 303 33.0
PSO478G3943 Papaver somniferum HOM05D005860 ORTHO05D006977 6.4e-27 125.2 299 34.4
PSO017G5933 Papaver somniferum HOM05D005860 ORTHO05D006977 8.3e-27 124.8 299 34.1
Cpa.g.sc171.37 Carica papaya HOM05D005860 ORTHO05D006977 2.4e-26 123.2 293 33.4
Dinv19535 Davidia involucrata HOM05D005860 ORTHO05D006977 5.4e-26 122.1 315 31.7
Rhsim08G0044500 Rhododendron simsii HOM05D005860 ORTHO05D006977 7.0e-26 121.7 311 30.5
Gohir.D10G072200 Gossypium hirsutum HOM05D005860 ORTHO05D006977 1.0e-24 117.9 280 33.2
Potri.017G067600 Populus trichocarpa HOM05D005860 ORTHO05D006977 1.0e-24 117.9 302 33.1
Atru.chr4.382 Acer truncatum HOM05D005860 ORTHO05D006977 3.9e-24 115.9 299 31.8
CiPaw.01G128900 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.5e-23 114.0 136 50.0
Duzib116G0811 Durio zibethinus HOM05D005860 ORTHO05D006977 1.5e-23 114.0 305 32.1
Thecc.08G160800 Theobroma cacao HOM05D005860 ORTHO05D006977 1.9e-23 113.6 305 31.8
Gorai.011G077700 Gossypium raimondii HOM05D005860 ORTHO05D006977 2.5e-23 113.2 307 30.9
ATR0686G114 Amborella trichopoda HOM05D005860 ORTHO05D006977 3.3e-23 112.8 299 31.1
Aqoxy5G03469 Aquilegia oxysepala HOM05D005860 ORTHO05D006977 4.3e-23 112.5 170 44.1
Manes.15G158200 Manihot esculenta HOM05D005860 ORTHO05D006977 5.6e-23 112.1 298 30.9
Gohir.A10G079300 Gossypium hirsutum HOM05D005860 ORTHO05D006977 7.3e-23 111.7 307 30.6
RcHm_v2.0_Chr2g0174841 Rosa chinensis HOM05D005860 ORTHO05D006977 2.1e-22 110.2 173 42.8
Lj2g0013553 Lotus japonicus HOM05D005860 ORTHO05D006977 4.7e-22 109.0 306 30.4
Sabra17G0063700 Salix brachista HOM05D005860 ORTHO05D006977 8.1e-22 108.2 297 32.0
TWI56G1326 Tripterygium wilfordii HOM05D005860 ORTHO05D006977 1.1e-21 107.8 297 30.3
MD17G1015100 Malus domestica HOM05D005860 ORTHO05D006977 8.9e-21 104.8 298 30.2
CAN.G473.79 Capsicum annuum HOM05D005860 ORTHO05D006977 1.2e-20 104.4 315 29.8
Solyc02g093940.3 Solanum lycopersicum HOM05D005860 ORTHO05D006977 3.4e-20 102.8 310 28.7
Sopen02g038590 Solanum pennellii HOM05D005860 ORTHO05D006977 3.4e-20 102.8 310 28.7
Hma1.2p1_1219F.1_g267900 Hydrangea macrophylla HOM05D005860 ORTHO05D006977 7.5e-20 101.7 311 28.9
Oeu058768.1 Olea europaea HOM05D005860 ORTHO05D006977 7.5e-20 101.7 309 29.1
FvH4_6g53060 Fragaria vesca HOM05D005860 ORTHO05D006977 1.7e-19 100.5 173 39.9
FAN14G2391 Fragaria x ananassa HOM05D005860 ORTHO05D006977 1.7e-19 100.5 173 39.9
Peaxi162Scf00420g00442 Petunia axillaris HOM05D005860 ORTHO05D006977 1.7e-19 100.5 182 37.4
SalBow1G3206 Salvia bowleyana HOM05D005860 ORTHO05D006977 2.9e-19 99.8 319 28.2
SalBow7G2829 Salvia bowleyana HOM05D005860 ORTHO05D006977 2.9e-19 99.8 319 28.2
Actinidia30891 Actinidia chinensis HOM05D005860 ORTHO05D006977 3.7e-19 99.4 311 28.3
COL.COLO4_03595 Corchorus olitorius HOM05D005860 ORTHO05D006977 3.7e-19 99.4 307 30.3
PGSC0003DMG400020220 Solanum tuberosum HOM05D005860 ORTHO05D006977 4.9e-19 99.0 182 37.4
arahy.Tifrunner.gnm1.ann1.SB3XQV Arachis hypogaea HOM05D005860 ORTHO05D006977 6.4e-19 98.6 306 29.1
FAN05G4081 Fragaria x ananassa HOM05D005860 ORTHO05D006977 8.3e-19 98.2 173 38.7
PSO782G4049 Papaver somniferum HOM05D005860 ORTHO05D006977 8.3e-19 98.2 300 29.0
Prupe.3G302700 Prunus persica HOM05D005860 ORTHO05D006977 8.3e-19 98.2 225 32.4
THA.LOC104825612 Tarenaya hassleriana HOM05D005860 ORTHO05D006977 8.3e-19 98.2 296 28.4
Rhsim08G0044700 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.1e-18 97.8 269 30.5
FAN09G0694 Fragaria x ananassa HOM05D005860 ORTHO05D006977 1.4e-18 97.4 173 38.7
Lju41A50T54 Lonicera japonica HOM05D005860 ORTHO05D006977 1.4e-18 97.4 317 29.0
Sc16g0003100 Simmondsia chinensis HOM05D005860 ORTHO05D006977 1.4e-18 97.4 315 28.9
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 1.9e-18 97.1 310 28.1
Glyma.09G171700 Glycine max HOM05D005860 ORTHO05D006977 2.4e-18 96.7 212 34.9
Ciclev10011572m.g Citrus clementina HOM05D005860 ORTHO05D006977 5.4e-18 95.5 306 29.1
Nitab4.5_0002887g0110 Nicotiana tabacum HOM05D005860 ORTHO05D006977 5.4e-18 95.5 182 36.3
Sed0023405 Sechium edule HOM05D005860 ORTHO05D006977 7.1e-18 95.1 298 29.2
DCAR_021767 Daucus carota HOM05D005860 ORTHO05D006977 9.2e-18 94.7 305 27.9
Phvul.004G147000 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 9.2e-18 94.7 306 29.4
Haze_00763 Corylus avellana HOM05D005860 ORTHO05D006977 1.2e-17 94.4 264 31.1
Nitab4.5_0009757g0020 Nicotiana tabacum HOM05D005860 ORTHO05D006977 1.6e-17 94.0 182 36.3
Medtr2g034600 Medicago truncatula HOM05D005860 ORTHO05D006977 2.1e-17 93.6 307 29.3
CsaV3_6G042570 Cucumis sativus L. HOM05D005860 ORTHO05D006977 2.7e-17 93.2 173 38.2
Lj7A609T51 Lonicera japonica HOM05D005860 ORTHO05D006977 2.7e-17 93.2 313 28.8
VMungo0464G0018 Vigna mungo HOM05D005860 ORTHO05D006977 6.0e-17 92.0 173 38.2
Migut.K01447 Erythranthe guttata HOM05D005860 ORTHO05D006977 7.8e-17 91.7 319 27.0
PSO063G3212 Papaver somniferum HOM05D005860 ORTHO05D006977 1.0e-16 91.3 300 28.0
Rhsim08G0044900 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.0e-16 91.3 196 33.2
CSS0015596 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 1.3e-16 90.9 313 28.1
CSS0028115 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 1.3e-16 90.9 313 28.1
ClCG01G016270 Citrullus lanatus HOM05D005860 ORTHO05D006977 1.3e-16 90.9 163 39.9
MELO3C007497.2 Cucumis melo HOM05D005860 ORTHO05D006977 1.7e-16 90.5 172 37.8
arahy.Tifrunner.gnm1.ann1.WZ54PF Arachis hypogaea HOM05D005860 ORTHO05D006977 2.3e-16 90.1 306 27.8
Ah.03g142080 Amaranthus hybridus HOM05D005860 ORTHO05D006977 1.9e-15 87.0 308 28.2
vmacro18326 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 4.3e-15 85.9 312 25.6
Oeu050423.1 Olea europaea HOM05D005860 ORTHO05D006977 5.6e-15 85.5 185 35.1
Sed0015041 Sechium edule HOM05D005860 ORTHO05D006977 7.3e-15 85.1 299 26.8
TPR.G5727 Trifolium pratense HOM05D001503 ORTHO05D003820 1.2e-14 84.3 305 28.5
EL10Ac1g02122 Beta vulgaris HOM05D005860 ORTHO05D006977 1.6e-14 84.0 312 27.6
Hund24045 Selenicereus undatus HOM05D005860 ORTHO05D006977 2.1e-14 83.6 316 26.9
AL7G41520 Arabidopsis lyrata HOM05D005860 ORTHO05D006977 3.6e-14 82.8 295 26.4
Lalb_Chr02g0157831 Lupinus albus HOM05D005860 ORTHO05D006977 3.6e-14 82.8 305 28.2
Carub.0007s2760 Capsella rubella HOM05D005860 ORTHO05D006977 4.7e-14 82.4 162 35.8
Sp7g12700 Schrenkiella parvula HOM05D005860 ORTHO05D006977 4.7e-14 82.4 164 36.6
ATR0686G162 Amborella trichopoda HOM05D005860 ORTHO05D006977 8.1e-14 81.6 219 30.6
AT4G14605 Arabidopsis thaliana HOM05D005860 ORTHO05D006977 8.1e-14 81.6 162 36.4
BraA01t02219Z Brassica rapa HOM05D005860 ORTHO05D006977 1.1e-13 81.3 164 36.0
CANSAT64G0040 Cannabis sativa HOM05D005860 ORTHO05D006977 1.1e-13 81.3 181 34.3
Psat1g161720 Pisum sativum HOM05D005860 ORTHO05D006977 1.1e-13 81.3 307 28.0
Haze_14838 Corylus avellana HOM05D005860 ORTHO05D006977 1.4e-13 80.9 206 33.0
BcaNung00353 Brassica carinata HOM05D005860 ORTHO05D006977 1.8e-13 80.5 166 35.5
BcaC09g50132 Brassica carinata HOM05D005860 ORTHO05D006977 2.3e-13 80.1 167 35.3
C01p28690 Brassica napus HOM05D005860 ORTHO05D006977 2.3e-13 80.1 167 35.3
BolC1t02795H Brassica oleracea HOM05D005860 ORTHO05D006977 2.3e-13 80.1 167 35.3
CARHR220830 Cardamine hirsuta HOM05D005860 ORTHO05D006977 2.3e-13 80.1 159 35.8
AUR62032474 Chenopodium quinoa HOM05D005860 ORTHO05D006977 2.3e-13 80.1 312 27.2
Thhalv10025001m.g Eutrema salsugineum HOM05D005860 ORTHO05D006977 2.3e-13 80.1 163 36.2
A01p23060 Brassica napus HOM05D005860 ORTHO05D006977 4.0e-13 79.3 169 34.9
AUR62043070 Chenopodium quinoa HOM05D005860 ORTHO05D006977 5.2e-13 79.0 312 27.2
ECA232G2764 Erigeron canadensis HOM05D005860 ORTHO05D006977 5.2e-13 79.0 315 25.1
unitig_0.g543 Utricularia gibba HOM05D005860 ORTHO05D006977 1.3e-11 74.3 186 31.2
SGA_v2.0_scaffold7G03541 Striga asiatica HOM05D005860 ORTHO05D006977 4.9e-11 72.4 315 25.1
HPP92_024250 Vanilla planifolia HOM05D005860 ORTHO05D006977 4.9e-11 72.4 230 28.3
Rhsim08G0044400 Rhododendron simsii HOM05D005860 ORTHO05D006977 6.4e-11 72.0 255 28.6
Aa31LG9G2730 Aethionema arabicum HOM05D005860 ORTHO05D006977 1.4e-10 70.9 167 32.9
Glyma.09G171766 Glycine max HOM05D005860 ORTHO05D006977 2.4e-10 70.1 41 73.2
Cfa015733 Carpinus fangiana HOM05D005860 ORTHO05D006977 9.2e-10 68.2 141 36.2
HanXRQChr15g0486891 Helianthus annuus HOM05D005860 ORTHO05D006977 2.1e-09 67.0 318 24.8
HPP92_024230 Vanilla planifolia HOM05D005860 ORTHO05D006977 1.3e-08 64.3 230 26.5
Rhsim08G0045000 Rhododendron simsii HOM05D005860 ORTHO05D006977 2.3e-08 63.5 176 29.5
Migut.C00523 Erythranthe guttata HOM05D005860 ORTHO05D006977 4.3e-07 59.3 95 43.2
Zm00001eb246440 Zea mays HOM05D005860 ORTHO05D006977 4.3e-07 59.3 286 24.5
Lj7A719T46 Lonicera japonica HOM05D005956 ORTHO05D007197 5.6e-07 58.9 78 39.7
Sp6g16240 Schrenkiella parvula HOM05D003457 ORTHO05D009746 5.6e-07 58.9 98 35.7
AL8G29400 Arabidopsis lyrata HOM05D003457 ORTHO05D009746 9.6e-07 58.2 98 35.7
AT5G54180 Arabidopsis thaliana HOM05D003457 ORTHO05D009746 9.6e-07 58.2 98 35.7
Thhalv10013278m.g Eutrema salsugineum HOM05D003457 ORTHO05D009746 9.6e-07 58.2 98 35.7
A10p11500 Brassica napus HOM05D003457 ORTHO05D009746 1.2e-06 57.8 98 35.7
C09p44480 Brassica napus HOM05D003457 ORTHO05D009746 1.2e-06 57.8 98 35.7
BraA10t43244Z Brassica rapa HOM05D003457 ORTHO05D009746 1.2e-06 57.8 98 35.7
BolC9t57320H Brassica oleracea HOM05D003457 ORTHO05D009746 2.1e-06 57.0 98 35.7
Aa31LG3G9830 Aethionema arabicum HOM05D003457 ORTHO05D009746 2.8e-06 56.6 98 34.7
Carub.0008s1449 Capsella rubella HOM05D003457 ORTHO05D009746 2.8e-06 56.6 98 34.7
CBR_g4822 Chara braunii HOM05D005605 ORTHO05D007615 2.8e-06 56.6 72 36.1
Mapoly0029s0044 Marchantia polymorpha HOM05D005860 ORTHO05D006977 2.8e-06 56.6 55 36.4
CARHR267390 Cardamine hirsuta HOM05D003457 ORTHO05D009746 3.6e-06 56.2 98 34.7
Sp5g33970 Schrenkiella parvula HOM05D005956 ORTHO05D007197 3.6e-06 56.2 81 37.0
AagrBONN_evm.TU.Sc2ySwM_368.2733 Anthoceros agrestis HOM05D005605 ORTHO05D001299 4.7e-06 55.8 107 29.0
BraA07t31918Z Brassica rapa HOM05D000309 ORTHO05D007197 4.7e-06 55.8 96 36.5
SEGI_12619 Sequoiadendron giganteum HOM05D025549 ORTHO05D023518 6.2e-06 55.5 135 29.6


User provided reference genes

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