Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.9e-77 292.4 137 100.0
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 8.8e-27 124.0 118 56.8
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.1e-26 123.6 64 89.1
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 5.7e-26 121.3 64 89.1
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 7.4e-26 120.9 64 87.5
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 7.4e-26 120.9 64 87.5
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 7.4e-26 120.9 63 88.9
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 9.7e-26 120.6 64 89.1
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 1.3e-25 120.2 64 87.5
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 1.3e-25 120.2 64 87.5
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.7e-25 119.8 63 87.3
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.7e-25 119.8 63 87.3
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 1.7e-25 119.8 64 87.5
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 1.7e-25 119.8 64 87.5
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 1.7e-25 119.8 64 87.5
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 1.7e-25 119.8 64 87.5
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 2.2e-25 119.4 64 87.5
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 2.2e-25 119.4 64 87.5
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 2.2e-25 119.4 64 87.5
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 2.2e-25 119.4 64 87.5
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 2.2e-25 119.4 64 87.5
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 2.2e-25 119.4 64 87.5
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 2.2e-25 119.4 63 87.3
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 2.8e-25 119.0 64 85.9
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 2.8e-25 119.0 62 88.7
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 2.8e-25 119.0 64 87.5
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 2.8e-25 119.0 64 87.5
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 2.8e-25 119.0 62 88.7
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 2.8e-25 119.0 64 87.5
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 85.9
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 4.8e-25 118.2 64 84.4
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 4.8e-25 118.2 64 85.9
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 6.3e-25 117.9 64 85.9
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 6.3e-25 117.9 64 85.9
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 6.3e-25 117.9 64 85.9
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 6.3e-25 117.9 64 84.4
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 6.3e-25 117.9 64 87.5
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 8.2e-25 117.5 64 84.4
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 8.2e-25 117.5 64 85.9
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 8.2e-25 117.5 64 85.9
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 8.2e-25 117.5 64 85.9
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 8.2e-25 117.5 64 85.9
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 1.1e-24 117.1 60 90.0
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 1.1e-24 117.1 60 90.0
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.1e-24 117.1 60 90.0
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 1.1e-24 117.1 60 90.0
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.4e-24 116.7 64 85.9
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.4e-24 116.7 62 87.1
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.4e-24 116.7 62 87.1
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 2.4e-24 115.9 64 85.9
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 2.4e-24 115.9 60 88.3
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 2.4e-24 115.9 60 88.3
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 4.1e-24 115.2 64 84.4
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 4.1e-24 115.2 59 89.8
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 4.1e-24 115.2 64 84.4
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 5.3e-24 114.8 60 86.7
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 5.3e-24 114.8 60 88.3
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 7.0e-24 114.4 60 88.3
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 9.1e-24 114.0 59 88.1
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 9.1e-24 114.0 60 86.7
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 1.2e-23 113.6 60 86.7
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 1.6e-23 113.2 60 86.7
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 3.5e-23 112.1 77 74.0
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 3.8e-22 108.6 70 75.7
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 6.5e-22 107.8 64 81.2
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 7.2e-21 104.4 60 78.3
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 1.6e-20 103.2 100 57.0
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 1.6e-20 103.2 100 57.0
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 4.0e-19 98.6 101 53.5
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 5.2e-19 98.2 70 68.6
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 8.8e-19 97.4 64 75.0
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 8.8e-19 97.4 62 75.8
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.2e-18 97.1 53 84.9
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 1.5e-18 96.7 59 72.9
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 5.7e-18 94.7 54 77.8
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 7.5e-18 94.4 54 77.8
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.8e-16 89.7 59 72.9
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 9.1e-16 87.4 58 74.1
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.5e-13 80.1 47 83.0
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 1.9e-13 79.7 52 67.3
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 2.5e-13 79.3 43 81.4
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 2.5e-13 79.3 53 71.7
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 5.5e-13 78.2 43 86.0
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 9.4e-13 77.4 51 66.7
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 9.4e-13 77.4 51 66.7
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 9.4e-13 77.4 40 90.0
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 9.4e-13 77.4 40 90.0
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 9.4e-13 77.4 40 90.0
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 2.1e-12 76.3 40 87.5
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 4.7e-12 75.1 40 87.5
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.3e-09 67.0 59 55.9


User provided reference genes

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