Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 3.6e-94 348.2 173 100.0
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 9.9e-76 287.0 154 91.6
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 4.5e-68 261.5 162 82.7
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 7.6e-68 260.8 162 82.1
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 9.9e-68 260.4 155 85.2
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 1.3e-67 260.0 155 85.2
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.8e-67 258.5 158 83.5
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 8.4e-67 257.3 157 82.8
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 1.1e-66 256.9 154 83.8
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 1.4e-66 256.5 155 83.2
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 5.4e-66 254.6 154 83.1
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 5.1e-64 248.1 154 81.2
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 1.9e-63 246.1 147 84.4
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 2.5e-63 245.7 160 81.2
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 5.6e-63 244.6 156 80.8
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.6e-63 244.6 155 79.4
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 5.6e-63 244.6 154 80.5
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 1.3e-62 243.4 127 92.1
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 2.8e-62 242.3 127 90.6
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 6.2e-62 241.1 153 79.7
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 8.1e-62 240.7 158 80.4
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 1.1e-61 240.4 142 85.2
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.1e-61 240.4 157 79.0
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.8e-61 239.6 177 73.4
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.8e-61 239.6 176 73.9
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 2.4e-61 239.2 155 78.7
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 3.1e-61 238.8 158 79.1
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.0e-61 238.4 168 75.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 5.3e-61 238.0 153 79.1
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 1.2e-60 236.9 164 75.6
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.5e-60 236.5 170 73.5
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 3.4e-60 235.3 155 79.4
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 3.4e-60 235.3 154 76.0
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.3e-59 233.4 152 77.0
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 2.2e-59 232.6 155 78.1
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 2.2e-59 232.6 155 78.1
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.9e-59 232.3 162 77.8
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.9e-59 232.3 147 78.2
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 3.8e-59 231.9 148 78.4
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.9e-59 231.5 183 69.9
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 6.5e-59 231.1 155 77.4
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 6.5e-59 231.1 161 75.2
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 8.4e-59 230.7 123 89.4
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 2.5e-58 229.2 172 72.1
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.2e-58 228.8 169 72.8
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 5.5e-58 228.0 148 77.7
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 9.3e-58 227.3 128 87.5
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 2.1e-57 226.1 163 72.4
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.1e-57 226.1 158 75.3
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.1e-57 226.1 128 86.7
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.1e-57 226.1 154 76.0
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 2.7e-57 225.7 143 79.0
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 2.7e-57 225.7 157 75.8
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 3.5e-57 225.3 155 76.1
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 3.5e-57 225.3 156 76.9
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 4.6e-57 224.9 128 86.7
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 4.6e-57 224.9 172 69.8
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 4.6e-57 224.9 157 76.4
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 4.6e-57 224.9 148 77.7
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 7.9e-57 224.2 159 71.7
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 7.9e-57 224.2 159 71.7
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.3e-56 223.4 159 71.7
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.3e-56 223.4 154 75.3
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 3.9e-56 221.9 149 78.5
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 3.9e-56 221.9 159 72.3
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 5.1e-56 221.5 156 75.0
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 5.1e-56 221.5 149 76.5
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 8.7e-56 220.7 162 74.1
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 8.7e-56 220.7 162 74.1
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 8.7e-56 220.7 148 75.0
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.5e-55 219.9 132 80.3
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 1.9e-55 219.5 147 77.6
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 3.3e-55 218.8 176 66.5
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 4.3e-55 218.4 125 83.2
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 5.7e-55 218.0 154 74.0
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 9.6e-55 217.2 132 81.8
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 9.6e-55 217.2 162 71.6
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 9.6e-55 217.2 149 75.8
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 9.6e-55 217.2 149 75.8
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 9.6e-55 217.2 149 75.8
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.3e-54 216.9 125 85.6
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 2.1e-54 216.1 126 85.7
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 2.1e-54 216.1 159 69.2
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 2.8e-54 215.7 159 69.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 3.7e-54 215.3 150 74.7
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 3.7e-54 215.3 159 70.4
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 4.8e-54 214.9 124 86.3
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 6.2e-54 214.5 148 75.0
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 8.2e-54 214.2 155 73.5
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.8e-53 213.0 159 68.6
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.8e-53 213.0 143 75.5
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.4e-53 212.6 153 74.5
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 4.1e-53 211.8 155 72.3
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 5.3e-53 211.5 126 82.5
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.3e-53 211.5 143 74.8
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.0e-53 210.7 143 75.5
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 9.0e-53 210.7 149 72.5
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 3.4e-52 208.8 153 72.5
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.4e-52 208.8 155 71.0
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.5e-52 208.4 176 66.5
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 1.0e-51 207.2 158 72.2
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.0e-51 207.2 144 73.6
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.3e-51 206.8 159 67.3
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 6.5e-51 204.5 143 74.1
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 8.4e-51 204.1 132 76.5
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.4e-50 203.4 154 69.5
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.9e-50 203.0 118 85.6
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.9e-50 203.0 166 68.1
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.5e-50 202.6 119 81.5
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.5e-50 201.4 201 58.7
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 7.1e-50 201.1 216 57.4
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.6e-49 199.9 106 93.4
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.6e-49 199.9 150 70.7
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.1e-49 199.5 165 67.3
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.1e-49 199.5 105 94.3
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 2.7e-49 199.1 107 90.7
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 3.5e-49 198.7 116 85.3
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 2.3e-48 196.1 117 82.1
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.1e-48 194.9 143 69.9
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.7e-48 194.1 148 70.9
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.7e-48 194.1 149 71.1
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.3e-47 192.2 116 81.0
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 2.2e-46 189.5 116 81.0
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 1.1e-45 187.2 119 77.3
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.4e-45 186.8 148 66.9
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.4e-45 186.8 180 60.0
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.4e-45 186.0 146 68.5
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.1e-45 185.3 155 65.2
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 7.7e-44 181.0 168 61.9
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.7e-44 181.0 120 75.0
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 2.9e-43 179.1 118 72.0
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 8.5e-43 177.6 105 84.8
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.1e-42 177.2 102 82.4
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 1.9e-42 176.4 143 65.7
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 2.5e-42 176.0 155 59.4
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 1.2e-41 173.7 115 76.5
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.4e-40 170.2 156 61.5
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.4e-40 170.2 166 60.8
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.3e-40 169.5 143 64.3
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.3e-40 169.5 143 64.3
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 8.8e-40 167.5 147 61.2
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-39 167.2 143 64.3
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.5e-39 166.8 95 83.2
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 2.4e-37 159.5 118 69.5
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 3.1e-37 159.1 139 64.0
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 2.6e-36 156.0 126 62.7
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.6e-33 146.7 76 96.1
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 2.6e-31 139.4 107 68.2
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 5.7e-31 138.3 133 57.1
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.5e-26 122.9 132 58.3
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 3.6e-25 119.0 83 75.9
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.1e-23 114.0 58 91.4
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 4.4e-23 112.1 120 48.3
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.3e-22 110.5 97 61.9
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.8e-22 109.4 60 83.3
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 6.3e-22 108.2 74 78.4
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.4e-21 107.1 75 69.3
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.2e-20 104.0 75 68.0
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 1.6e-20 103.6 75 68.0
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 4.5e-20 102.1 60 83.3
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 6.8e-16 88.2 47 87.2
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 8.3e-14 81.3 140 40.7
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 2.7e-12 76.3 132 34.8
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 1.6e-09 67.0 39 76.9
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.6e-09 67.0 165 31.5


User provided reference genes

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