Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0038 Trochodendron aralioides HOM05D002502 ORTHO05D039600 4.6e-59 231.1 123 100.0
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 9.3e-52 206.8 117 95.7
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 2.7e-35 152.1 116 73.3
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 3.5e-35 151.8 114 76.3
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 3.5e-35 151.8 114 76.3
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 3.5e-35 151.8 110 72.7
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 3.5e-35 151.8 118 75.4
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 1.0e-34 150.2 123 73.2
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 2.3e-34 149.1 121 71.1
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 3.9e-34 148.3 113 77.0
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 5.1e-34 147.9 117 71.8
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 5.1e-34 147.9 118 74.6
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 8.7e-34 147.1 123 71.5
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 1.5e-33 146.4 121 70.2
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 2.5e-33 145.6 102 76.5
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 4.3e-33 144.8 117 70.9
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 5.6e-33 144.4 104 77.9
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea HOM05D002502 ORTHO05D003592 5.6e-33 144.4 104 77.9
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 5.6e-33 144.4 115 69.6
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 5.6e-33 144.4 102 78.4
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 9.6e-33 143.7 118 73.7
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 9.6e-33 143.7 113 71.7
CDE12G0187 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 2.1e-32 142.5 105 76.2
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 2.1e-32 142.5 117 70.1
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 2.1e-32 142.5 121 69.4
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 2.8e-32 142.1 121 71.1
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 3.7e-32 141.7 116 70.7
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 3.7e-32 141.7 110 72.7
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 6.2e-32 141.0 119 70.6
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 1.1e-31 140.2 121 70.2
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 1.4e-31 139.8 85 88.2
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 2.4e-31 139.0 112 73.2
CDE04G3381 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 2.4e-31 139.0 105 75.2
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 3.1e-31 138.7 111 70.3
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 4.0e-31 138.3 112 71.4
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 4.0e-31 138.3 103 74.8
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 4.0e-31 138.3 119 72.3
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 6.9e-31 137.5 115 68.7
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 6.9e-31 137.5 104 72.1
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 1.2e-30 136.7 114 72.8
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 1.2e-30 136.7 119 72.3
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 1.2e-30 136.7 119 72.3
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 2.6e-30 135.6 102 74.5
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 2.6e-30 135.6 119 69.7
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 7.6e-30 134.0 112 67.9
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 7.6e-30 134.0 102 76.5
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 1.3e-29 133.3 116 69.0
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 1.7e-29 132.9 112 68.8
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 1.7e-29 132.9 104 74.0
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 1.7e-29 132.9 112 70.5
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 2.2e-29 132.5 103 74.8
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 2.2e-29 132.5 108 70.4
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 2.9e-29 132.1 102 75.5
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 4.9e-29 131.3 116 62.1
RcHm_v2.0_Chr5g0051921 Rosa chinensis HOM05D002502 ORTHO05D003592 6.5e-29 131.0 112 67.0
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 2.5e-28 129.0 112 68.8
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 2.5e-28 129.0 112 68.8
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 2.5e-28 129.0 116 64.7
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 2.5e-28 129.0 81 86.4
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 2.5e-28 129.0 116 65.5
MSTRG.620 Avicennia marina HOM05D002502 ORTHO05D003592 3.2e-28 128.6 104 71.2
Actinidia08181 Actinidia chinensis HOM05D002502 ORTHO05D003592 4.2e-28 128.3 76 88.2
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 5.5e-28 127.9 85 77.6
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 9.3e-28 127.1 77 87.0
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 9.3e-28 127.1 77 87.0
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 1.2e-27 126.7 76 88.2
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 1.2e-27 126.7 103 68.9
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.7e-27 125.6 77 87.0
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.7e-27 125.6 77 87.0
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 4.6e-27 124.8 81 80.2
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 7.9e-27 124.0 76 86.8
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 1.0e-26 123.6 76 85.5
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 1.0e-26 123.6 117 62.4
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 2.3e-26 122.5 108 67.6
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 3.0e-26 122.1 81 80.2
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 3.9e-26 121.7 118 61.9
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 5.1e-26 121.3 76 86.8
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 6.7e-26 120.9 83 75.9
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 6.7e-26 120.9 83 75.9
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 8.7e-26 120.6 116 64.7
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 8.7e-26 120.6 112 65.2
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 8.7e-26 120.6 110 63.6
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 1.1e-25 120.2 76 84.2
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 1.1e-25 120.2 76 82.9
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 1.5e-25 119.8 114 65.8
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 1.5e-25 119.8 77 81.8
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 1.9e-25 119.4 115 62.6
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.9e-25 119.4 115 62.6
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.9e-25 119.4 76 82.9
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 1.9e-25 119.4 76 81.6
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 1.9e-25 119.4 113 62.8
Cc00_g01510 Coffea canephora HOM05D002502 ORTHO05D003592 2.5e-25 119.0 78 79.5
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 2.5e-25 119.0 103 66.0
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 3.3e-25 118.6 76 82.9
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 3.3e-25 118.6 111 63.1
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 3.3e-25 118.6 75 84.0
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 3.3e-25 118.6 75 84.0
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 3.3e-25 118.6 75 84.0
unitig_26.g9281 Utricularia gibba HOM05D000407 ORTHO05D001717 5.7e-25 117.9 105 63.8
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 5.7e-25 117.9 116 61.2
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 7.4e-25 117.5 76 80.3
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 9.7e-25 117.1 102 65.7
FAN21G3969 Fragaria x ananassa HOM05D002502 ORTHO05D003592 9.7e-25 117.1 76 81.6
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 9.7e-25 117.1 111 64.0
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 9.7e-25 117.1 101 66.3
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 1.6e-24 116.3 76 82.9
Nitab4.5_0000592g0070 Nicotiana tabacum HOM05D002502 ORTHO05D003592 1.6e-24 116.3 96 71.9
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 2.2e-24 115.9 120 57.5
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 2.2e-24 115.9 76 81.6
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 2.8e-24 115.5 81 75.3
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 3.7e-24 115.2 124 56.5
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 3.7e-24 115.2 74 79.7
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 6.3e-24 114.4 103 63.1
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 6.3e-24 114.4 89 70.8
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 6.3e-24 114.4 82 74.4
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 8.2e-24 114.0 75 77.3
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 8.2e-24 114.0 75 80.0
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 1.4e-23 113.2 113 58.4
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.8e-23 112.8 76 76.3
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.8e-23 112.8 76 76.3
Cpa.g.c38405.2 Carica papaya HOM05D002502 ORTHO05D003592 2.4e-23 112.5 87 72.4
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 4.1e-23 111.7 76 77.6
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 6.9e-23 110.9 76 76.3
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 9.0e-23 110.5 73 79.5
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 1.5e-22 109.8 73 79.5
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 2.0e-22 109.4 75 77.3
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 2.0e-22 109.4 120 56.7
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 3.4e-22 108.6 104 60.6
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 3.4e-22 108.6 117 55.6
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 4.5e-22 108.2 73 78.1
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 7.6e-22 107.5 76 75.0
BcaC05g24904 Brassica carinata HOM05D002502 ORTHO05D003592 7.6e-22 107.5 117 56.4
BolC5t29592H Brassica oleracea HOM05D002502 ORTHO05D003592 7.6e-22 107.5 117 56.4
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 1.3e-21 106.7 76 72.4
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 2.9e-21 105.5 77 70.1
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 3.8e-21 105.1 76 69.7
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 6.5e-21 104.4 71 76.1
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 6.5e-21 104.4 77 67.5
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.4e-20 103.2 76 71.1
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 1.9e-20 102.8 76 65.8
CARHR010410 Cardamine hirsuta HOM05D002502 ORTHO05D003592 1.9e-20 102.8 111 55.9
THA.LOC104799100 Tarenaya hassleriana HOM05D002502 ORTHO05D003592 1.9e-20 102.8 73 69.9
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 3.2e-20 102.1 76 65.8
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 3.2e-20 102.1 75 72.0
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 7.2e-20 100.9 76 64.5
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 9.3e-20 100.5 76 65.8
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 1.2e-19 100.1 76 64.5
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 1.2e-19 100.1 76 64.5
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 1.2e-19 100.1 76 64.5
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 1.2e-19 100.1 76 64.5
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 1.2e-19 100.1 76 64.5
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 1.6e-19 99.8 76 65.8
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 1.6e-19 99.8 88 62.5
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 1.6e-19 99.8 76 64.5
FAN09G2849 Fragaria x ananassa HOM05D002502 ORTHO05D003592 2.1e-19 99.4 115 57.4
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 2.7e-19 99.0 76 69.7
Sed0022998 Sechium edule HOM05D002502 ORTHO05D003592 2.7e-19 99.0 93 61.3
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 3.6e-19 98.6 101 55.4
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 3.6e-19 98.6 76 63.2
Pp3c23_20710 Physcomitrium patens HOM05D002502 ORTHO05D003592 3.6e-19 98.6 106 53.8
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 4.6e-19 98.2 137 47.4
Os07g0110200 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 6.1e-19 97.8 75 65.3
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 6.1e-19 97.8 110 52.7
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 7.9e-19 97.4 111 50.5
Os06g0195900 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 1.8e-18 96.3 75 65.3
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 3.9e-18 95.1 76 61.8
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 5.1e-18 94.7 76 60.5
BcaC05g24914 Brassica carinata HOM05D002502 ORTHO05D039600 2.5e-17 92.4 98 59.2
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 3.3e-17 92.0 109 48.6
Thecc.09G232800 Theobroma cacao HOM05D002502 ORTHO05D003592 4.3e-17 91.7 83 63.9
TAR365G0446 Trochodendron aralioides HOM05D002502 ORTHO05D003592 5.7e-17 91.3 55 90.9
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 9.7e-17 90.5 94 52.1
FAN14G2513 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.5e-14 83.2 100 53.0
RcHm_v2.0_Chr3g0491461 Rosa chinensis HOM05D002502 ORTHO05D003592 5.9e-14 81.3 72 69.4
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 1.9e-12 76.3 122 41.8
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 9.4e-12 73.9 78 55.1
Cpa.g.c44337.2 Carica papaya HOM05D002502 ORTHO05D003592 7.9e-11 70.9 47 80.9
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 7.9e-11 70.9 99 46.5
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.4e-10 70.1 110 47.3
HPP92_002935 Vanilla planifolia HOM05D002502 ORTHO05D003592 6.7e-10 67.8 49 73.5
Lsat_1_v5_gn_1_11821 Lactuca sativa HOM05D002502 ORTHO05D003592 3.7e-08 62.0 53 62.3


User provided reference genes

Program Settings