Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.2e-135 484.2 254 100.0
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.9e-124 448.7 254 86.2
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.1e-115 420.2 228 87.7
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.1e-91 340.5 249 67.5
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 7.5e-64 248.1 253 52.6
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.8e-57 226.9 258 48.8
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 5.2e-57 225.3 235 54.5
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.1e-54 217.6 259 45.9
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 2.4e-54 216.5 258 47.7
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.3e-52 209.9 248 46.8
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 2.8e-50 203.0 245 44.5
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 2.8e-50 203.0 266 44.0
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.8e-50 203.0 250 44.8
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.8e-49 200.3 249 45.4
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.8e-49 200.3 249 45.8
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.3e-49 199.9 240 44.2
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 3.1e-49 199.5 249 44.2
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 5.2e-49 198.7 250 45.6
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 5.2e-49 198.7 249 45.4
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.5e-48 197.2 247 45.3
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.0e-48 196.8 246 43.9
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 2.0e-48 196.8 250 45.2
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.0e-48 196.8 250 43.6
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 4.4e-48 195.7 246 43.5
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 4.4e-48 195.7 254 42.9
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 5.8e-48 195.3 248 43.1
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 5.8e-48 195.3 250 43.6
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 7.5e-48 194.9 250 44.0
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 9.8e-48 194.5 250 43.2
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.7e-47 193.7 255 43.9
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 2.2e-47 193.4 249 45.4
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 2.2e-47 193.4 251 42.2
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.9e-47 193.0 253 44.3
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 3.7e-47 192.6 245 45.3
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 4.9e-47 192.2 247 44.5
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 8.3e-47 191.4 251 42.2
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.1e-46 191.0 250 44.8
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.4e-46 190.7 263 43.3
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.9e-46 190.3 255 42.7
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.9e-46 190.3 254 43.7
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 1.9e-46 190.3 249 44.2
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.9e-46 190.3 250 44.0
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 2.4e-46 189.9 249 44.2
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.4e-46 189.9 249 43.8
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.4e-46 189.9 249 43.4
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.2e-46 189.5 240 45.8
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 3.2e-46 189.5 250 42.4
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.1e-46 189.1 263 41.4
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 5.4e-46 188.7 248 43.5
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 5.4e-46 188.7 249 42.6
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.0e-46 188.3 253 42.3
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 9.2e-46 188.0 251 44.6
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.2e-45 187.6 250 43.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-45 186.4 250 40.4
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 2.7e-45 186.4 250 42.0
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 6.0e-45 185.3 253 39.5
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.0e-44 184.5 251 41.4
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.3e-44 184.1 245 43.7
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.3e-44 184.1 250 41.6
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-44 183.7 250 43.2
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.7e-44 183.7 249 42.2
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 2.3e-44 183.3 254 40.2
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.9e-44 182.6 255 41.2
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 5.0e-44 182.2 255 42.0
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 5.0e-44 182.2 250 42.8
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 5.0e-44 182.2 249 43.4
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 6.6e-44 181.8 248 41.9
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.6e-44 181.8 249 40.6
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 8.6e-44 181.4 248 40.3
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 8.6e-44 181.4 249 42.2
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 8.6e-44 181.4 247 42.1
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-43 181.0 248 41.9
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.9e-43 180.3 252 41.3
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.9e-43 180.3 246 42.7
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 3.3e-43 179.5 248 42.3
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 7.3e-43 178.3 254 37.8
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 7.3e-43 178.3 248 41.9
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 9.5e-43 177.9 248 42.3
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 9.5e-43 177.9 246 41.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.2e-42 177.6 253 38.3
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.6e-42 176.0 246 41.5
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 3.6e-42 176.0 251 41.4
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.7e-42 175.6 246 41.5
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 8.1e-42 174.9 252 36.9
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-41 174.5 246 41.5
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.4e-41 174.1 256 37.1
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.4e-41 174.1 252 36.9
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.4e-41 174.1 250 42.8
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 2.3e-41 173.3 253 37.2
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 4.0e-41 172.6 253 37.2
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 5.2e-41 172.2 253 37.2
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.2e-41 172.2 262 39.3
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 5.2e-41 172.2 255 38.8
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 6.8e-41 171.8 253 37.5
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 6.8e-41 171.8 255 36.9
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 6.8e-41 171.8 254 38.6
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 6.8e-41 171.8 253 37.5
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.5e-40 170.6 250 42.4
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.4e-40 169.5 218 42.2
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 9.8e-40 167.9 252 39.3
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.7e-39 167.2 250 38.0
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.2e-39 166.8 251 39.4
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-38 164.5 247 40.1
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.4e-38 164.1 246 40.2
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 2.4e-38 163.3 253 36.8
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 3.2e-38 162.9 228 39.9
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 7.1e-38 161.8 229 40.6
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.6e-37 160.6 249 39.0
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 2.1e-37 160.2 251 38.2
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.6e-37 159.1 229 40.2
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 4.6e-37 159.1 359 35.1
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.0e-36 157.9 251 39.0
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 5.1e-36 155.6 252 34.5
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 5.1e-36 155.6 251 38.2
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 6.6e-36 155.2 252 34.5
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 6.6e-36 155.2 252 37.3
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 2.5e-35 153.3 262 36.3
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 2.5e-35 153.3 265 38.1
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 4.3e-35 152.5 236 39.4
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 8.1e-34 148.3 257 34.6
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.8e-33 147.1 313 34.2
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 3.1e-33 146.4 363 32.8
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.6e-32 143.3 322 32.3
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 3.4e-32 142.9 250 38.4
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 1.3e-31 141.0 335 34.3
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 6.4e-31 138.7 240 36.2
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-30 137.9 319 32.6
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.7e-29 133.3 260 32.3
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 7.8e-29 131.7 261 34.5
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.7e-28 130.6 258 33.7
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 8.6e-28 128.3 153 45.1
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.6e-28 128.3 261 31.8
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 9.6e-27 124.8 158 46.2
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.6e-26 124.0 254 31.1
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 2.1e-26 123.6 133 50.4
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 4.0e-25 119.4 216 34.3
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 8.9e-25 118.2 187 37.4
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.0e-24 117.1 246 29.7
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.6e-24 116.7 217 32.7
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 6.4e-23 112.1 206 32.5
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 6.4e-23 112.1 206 32.5
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.1e-22 108.6 244 32.8
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 3.5e-21 106.3 151 41.1
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 6.0e-21 105.5 300 31.0
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 1.0e-20 104.8 155 40.6
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.0e-20 104.8 261 28.4
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.7e-20 104.0 248 29.8
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 8.7e-20 101.7 221 37.1
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 8.7e-20 101.7 155 38.7
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 3.3e-19 99.8 178 37.1
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 3.6e-18 96.3 263 30.0
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.4e-17 94.4 200 37.5
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.5e-16 90.9 237 31.6
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.0e-16 90.5 82 53.7
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-15 87.8 82 53.7
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.8e-15 86.3 72 52.8
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 4.9e-15 85.9 133 36.8
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.2e-14 82.8 101 41.6
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 3.9e-12 76.3 152 34.2
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.5e-11 74.3 143 30.8
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-09 68.2 180 30.6
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.3e-09 65.9 64 48.4
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.9e-09 65.5 174 29.9
FvH4_4g01090 Fragaria vesca HOM05D028185 ORTHO05D025555 9.3e-06 55.1 81 42.0


User provided reference genes

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