Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 9.7e-135 483.4 233 100.0
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.6e-119 432.2 231 89.2
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.5e-114 414.5 228 87.7
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.7e-84 315.8 228 69.3
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.4e-56 223.8 226 54.0
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 4.8e-49 198.7 208 51.4
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.8e-48 196.8 232 47.4
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 6.9e-48 194.9 233 47.6
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 4.5e-47 192.2 229 43.7
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 5.8e-47 191.8 226 44.7
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.7e-46 190.3 223 46.2
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.4e-45 187.2 233 46.8
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.6e-44 183.7 229 43.7
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 4.6e-44 182.2 229 43.7
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 6.0e-44 181.8 231 45.0
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 6.0e-44 181.8 231 45.5
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 6.0e-44 181.8 226 44.2
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 7.9e-44 181.4 232 44.8
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 7.9e-44 181.4 228 43.4
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.8e-43 180.3 231 45.0
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.3e-43 179.9 231 43.7
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.9e-43 179.1 227 42.3
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 5.1e-43 178.7 233 44.6
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 5.1e-43 178.7 231 43.3
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 5.1e-43 178.7 229 45.0
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 6.7e-43 178.3 230 43.5
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 6.7e-43 178.3 229 42.8
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 6.7e-43 178.3 235 44.3
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 8.7e-43 177.9 220 46.4
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.1e-42 177.6 231 42.4
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 1.5e-42 177.2 227 43.6
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 1.5e-42 177.2 233 42.5
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.9e-42 176.8 233 41.2
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.3e-42 176.0 232 42.7
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 3.3e-42 176.0 232 44.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 3.3e-42 176.0 232 43.5
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 4.3e-42 175.6 231 43.7
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 4.3e-42 175.6 232 44.4
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 4.3e-42 175.6 230 42.2
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 5.7e-42 175.3 229 42.4
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 9.7e-42 174.5 234 44.0
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.3e-41 174.1 229 39.7
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.6e-41 173.7 232 43.5
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.8e-41 172.9 231 43.3
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 4.8e-41 172.2 233 42.9
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 4.8e-41 172.2 233 43.3
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 4.8e-41 172.2 233 43.3
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 4.8e-41 172.2 231 43.7
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 6.3e-41 171.8 228 42.5
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 8.2e-41 171.4 231 42.4
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.1e-40 171.0 232 42.7
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 1.1e-40 171.0 231 39.8
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 1.1e-40 171.0 221 47.1
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.1e-40 171.0 232 42.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.4e-40 170.6 208 45.7
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.8e-40 170.2 231 42.4
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.4e-40 169.9 232 41.4
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.4e-40 169.9 227 44.1
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.1e-40 169.1 220 42.3
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 4.1e-40 169.1 233 37.8
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 5.3e-40 168.7 229 39.3
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 5.3e-40 168.7 227 41.9
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.3e-40 168.7 229 40.6
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 9.0e-40 167.9 233 37.3
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.2e-39 167.5 232 38.8
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.5e-39 167.2 230 38.3
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.5e-39 167.2 232 40.5
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.6e-39 166.4 221 40.7
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.6e-39 166.4 232 39.7
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 2.6e-39 166.4 228 40.8
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.6e-39 166.4 228 40.8
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.6e-39 166.4 229 42.4
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.4e-39 166.0 232 40.5
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 3.4e-39 166.0 228 40.8
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 4.5e-39 165.6 234 37.2
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 7.6e-39 164.9 230 39.6
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.0e-38 164.5 220 39.5
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.0e-38 164.5 227 40.5
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.0e-38 164.5 230 40.9
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.3e-38 164.1 230 37.4
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.7e-38 163.7 231 39.0
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.7e-38 163.7 228 40.4
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.2e-38 163.3 210 40.5
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.2e-38 163.3 229 39.7
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 3.8e-38 162.5 230 38.3
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 3.8e-38 162.5 230 38.3
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.8e-38 162.5 228 40.4
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 5.0e-38 162.2 231 41.6
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 6.5e-38 161.8 227 42.7
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 6.5e-38 161.8 230 40.9
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 8.5e-38 161.4 228 38.6
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 8.5e-38 161.4 232 39.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.1e-37 161.0 230 41.3
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.1e-37 161.0 235 38.3
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.1e-37 161.0 225 42.7
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.4e-37 160.6 231 41.1
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.5e-37 159.8 229 41.0
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.2e-37 159.1 228 41.2
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 7.2e-37 158.3 228 38.6
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 9.3e-37 157.9 228 39.0
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.2e-36 157.5 228 36.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.7e-36 156.4 230 40.0
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 6.1e-36 155.2 210 41.0
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 7.9e-36 154.8 233 39.5
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.9e-36 154.8 215 40.5
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 7.9e-36 154.8 229 37.6
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 1.0e-35 154.5 230 37.4
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 5.1e-35 152.1 215 39.5
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 1.1e-34 151.0 234 38.5
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.5e-34 150.6 210 41.4
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 6.3e-33 145.2 229 35.4
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-32 144.4 225 39.6
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 1.4e-32 144.1 229 34.9
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.4e-32 143.3 228 37.7
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 1.5e-31 140.6 303 33.3
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.6e-31 139.8 228 38.6
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 5.9e-31 138.7 284 34.2
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.0e-30 137.9 237 35.9
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 5.0e-30 135.6 277 33.2
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 8.5e-30 134.8 239 36.4
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-29 134.0 283 32.9
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 4.2e-29 132.5 212 39.2
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 9.4e-29 131.3 148 48.6
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 1.2e-28 131.0 230 35.7
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.6e-28 129.4 281 33.1
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 1.0e-27 127.9 213 38.5
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 3.0e-27 126.3 202 37.1
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.5e-26 124.0 231 34.6
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 2.0e-26 123.6 158 46.2
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 4.4e-26 122.5 225 35.1
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 9.7e-26 121.3 162 42.0
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 3.7e-25 119.4 170 43.5
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 2.4e-24 116.7 222 33.3
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.1e-24 116.3 234 31.6
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.2e-23 114.4 230 31.7
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.4e-23 112.8 235 31.1
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.7e-22 110.5 217 31.8
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.1e-21 107.8 161 37.9
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.2e-21 105.9 210 31.0
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 8.0e-20 101.7 221 30.3
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.0e-19 101.3 182 33.0
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.0e-19 101.3 182 33.0
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.4e-19 100.9 157 38.9
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 3.0e-19 99.8 218 31.7
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.9e-19 99.4 273 29.7
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 8.8e-19 98.2 155 38.1
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.1e-18 97.8 153 37.3
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.8e-17 92.4 223 31.8
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.1e-16 91.3 159 36.5
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.8e-16 90.5 85 51.8
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-15 87.8 85 51.8
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.2e-15 87.8 229 30.1
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.0e-15 87.0 239 31.8
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.6e-15 86.7 165 35.2
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.5e-15 85.9 225 28.4
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 3.8e-14 82.8 131 36.6
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.5e-13 80.1 97 43.3
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 4.7e-12 75.9 53 58.5
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 4.4e-10 69.3 131 34.4
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 5.3e-08 62.4 131 34.4
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.0e-07 60.5 95 41.1
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.5e-07 59.7 102 36.3


User provided reference genes

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