Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.5e-254 882.5 479 100.0
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.4e-166 588.6 469 74.4
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.9e-154 548.9 469 71.6
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.2e-124 449.1 495 55.2
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.2e-124 449.1 495 55.2
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.6e-110 401.7 339 67.8
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.5e-108 396.7 416 56.0
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 6.1e-107 392.1 476 52.5
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 6.7e-106 388.7 482 53.5
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 2.5e-105 386.7 478 54.2
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 1.3e-104 384.4 481 52.8
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 3.7e-104 382.9 478 49.6
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.7e-101 374.0 472 48.1
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 8.5e-101 371.7 478 46.9
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 3.2e-100 369.8 481 48.6
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 1.6e-99 367.5 477 45.5
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 4.6e-99 365.9 483 47.0
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 3.0e-98 363.2 484 47.9
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 3.9e-98 362.8 486 46.3
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 2.5e-97 360.1 479 45.9
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 2.2e-96 357.1 483 50.1
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.2e-96 355.1 477 45.7
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 8.2e-96 355.1 474 47.5
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 1.8e-95 354.0 487 45.8
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.1e-95 353.2 475 45.9
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 4.1e-95 352.8 469 47.1
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 1.2e-94 351.3 484 48.8
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 1.5e-94 350.9 488 49.2
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 5.9e-94 349.0 473 44.8
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 5.9e-94 349.0 484 45.9
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 2.2e-93 347.1 480 46.9
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 5.0e-93 345.9 471 46.5
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.5e-93 345.5 411 49.6
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.1e-92 344.7 411 49.6
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.1e-92 344.7 485 43.9
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 1.4e-92 344.4 484 48.8
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.9e-92 344.0 484 43.2
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.5e-92 343.6 484 43.0
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.2e-92 342.8 485 48.2
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 5.5e-92 342.4 411 49.1
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 7.2e-92 342.0 464 51.5
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.6e-91 340.9 487 45.0
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 2.7e-91 340.1 471 45.9
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 3.6e-91 339.7 482 46.3
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.0e-90 338.2 408 50.7
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.4e-90 337.8 479 42.8
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 5.1e-90 335.9 474 45.4
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 5.1e-90 335.9 479 43.2
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 5.1e-90 335.9 487 47.6
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 1.1e-89 334.7 471 42.9
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 2.6e-89 333.6 420 48.1
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 5.7e-89 332.4 470 46.4
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 8.2e-88 328.6 479 48.0
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.6e-86 323.6 500 46.6
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 7.7e-86 322.0 472 46.6
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 1.3e-85 321.2 476 48.1
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 4.2e-84 316.2 480 42.5
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 5.5e-84 315.8 477 43.6
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 7.2e-84 315.5 476 49.4
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 9.4e-84 315.1 473 48.2
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.4e-82 311.2 479 44.9
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 1.4e-82 311.2 483 45.5
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 1.4e-82 311.2 483 45.5
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.8e-82 310.8 475 46.1
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.8e-82 310.8 481 45.1
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 4.0e-82 309.7 487 41.9
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 5.2e-82 309.3 468 41.7
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 8.8e-82 308.5 458 45.2
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 1.1e-81 308.1 477 42.3
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 4.4e-81 306.2 410 48.5
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 2.2e-80 303.9 480 44.6
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 4.8e-80 302.8 399 47.9
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 6.3e-80 302.4 478 44.6
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 1.4e-79 301.2 490 41.2
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.8e-79 300.8 491 44.6
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 3.5e-78 296.6 496 40.7
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.9e-78 295.8 478 45.0
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 1.1e-76 291.6 481 43.7
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.9e-76 290.8 484 40.3
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 5.5e-76 289.3 496 40.9
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 5.5e-76 289.3 484 40.1
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 2.1e-75 287.3 500 40.0
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 8.0e-75 285.4 492 40.0
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 8.0e-75 285.4 479 40.1
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 1.8e-74 284.3 503 39.6
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.2e-73 281.6 498 37.8
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.5e-73 281.2 488 42.4
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.4e-73 280.0 477 44.7
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 7.5e-73 278.9 474 39.9
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 9.8e-73 278.5 473 40.2
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 2.2e-72 277.3 496 38.5
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 8.3e-72 275.4 489 43.8
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.4e-71 273.9 358 47.2
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.4e-71 272.7 486 42.6
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 7.0e-71 272.3 476 43.9
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.2e-70 271.6 332 48.5
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-70 271.2 490 38.8
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 5.9e-70 269.2 340 46.5
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 2.9e-69 266.9 486 39.1
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.5e-68 264.6 504 37.3
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.5e-68 264.6 474 43.5
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.9e-68 264.2 423 45.2
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 3.2e-68 263.5 313 47.9
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 7.2e-68 262.3 332 47.3
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.4e-68 261.9 486 42.6
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.4e-68 261.9 486 42.6
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.2e-66 256.1 413 42.4
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 6.8e-66 255.8 236 57.2
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-65 254.2 472 44.1
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 1.3e-64 251.5 472 37.9
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.7e-64 251.1 410 40.5
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 1.8e-63 247.7 467 39.8
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.1e-63 246.9 180 72.8
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.7e-61 241.1 390 41.8
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 1.5e-60 238.0 307 47.6
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 4.7e-59 233.0 473 35.7
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.4e-58 231.5 296 51.0
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.0e-58 229.9 479 41.1
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 6.8e-58 229.2 259 54.4
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 8.9e-58 228.8 299 50.5
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.2e-56 224.2 354 45.5
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 4.6e-54 216.5 486 39.5
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-53 214.9 477 37.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-51 208.4 301 41.2
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.0e-50 203.4 474 38.0
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 1.1e-47 195.3 468 35.3
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 2.7e-46 190.7 181 54.7
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 9.5e-44 182.2 238 50.0
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 1.2e-41 175.3 182 53.3
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 7.1e-39 166.0 320 38.8
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.1e-39 166.0 114 75.4
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-35 155.2 269 36.8
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.7e-35 153.3 161 54.7
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.7e-32 144.8 169 58.6
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.7e-30 137.5 332 36.7
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 2.7e-30 137.5 301 38.5
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.0e-30 136.3 142 52.8
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.0e-29 134.0 103 63.1
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 3.9e-29 133.7 407 29.7
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 3.6e-27 127.1 124 50.0
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.6e-27 127.1 151 49.7
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.1e-26 124.0 82 78.0
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 3.8e-24 117.1 277 36.1
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.4e-23 115.2 88 65.9
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-21 108.6 150 43.3
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.0e-17 94.7 72 65.3
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 3.4e-17 94.0 148 35.8
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 7.6e-17 92.8 196 39.3
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.9e-16 90.9 106 45.3
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.9e-12 78.2 74 52.7
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.3e-08 65.5 81 45.7
AUR62011479 Chenopodium quinoa HOM05D001219 ORTHO05D001017 8.4e-08 62.8 416 23.8
BraA03t09402Z Brassica rapa HOM05D002125 ORTHO05D002105 7.1e-07 59.7 185 29.7
SalBow5G3486 Salvia bowleyana HOM05D001905 ORTHO05D001820 1.6e-06 58.5 419 22.2
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 2.1e-06 58.2 407 25.3
Psat0s1674g0080 Pisum sativum HOM05D001219 ORTHO05D001017 6.0e-06 56.6 419 24.3
SalBow5G5277 Salvia bowleyana HOM05D001905 ORTHO05D001820 7.9e-06 56.2 411 22.4


User provided reference genes

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