Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.4e-80 302.8 143 100.0
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.6e-74 282.0 143 93.7
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.6e-74 282.0 143 93.7
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.3e-69 265.0 146 87.7
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.7e-68 262.7 146 87.0
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 6.3e-68 260.8 144 84.0
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.8e-67 259.2 148 84.5
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 4.1e-67 258.1 144 83.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 5.3e-67 257.7 143 84.6
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 1.5e-66 256.1 146 84.2
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 3.4e-66 255.0 143 85.3
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 3.4e-66 255.0 145 84.1
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 7.7e-66 253.8 145 84.1
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 2.9e-65 251.9 148 82.4
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.0e-65 251.1 145 85.5
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.0e-65 251.1 144 82.6
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 6.5e-65 250.8 139 87.1
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 6.5e-65 250.8 145 80.0
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 6.5e-65 250.8 146 80.8
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.1e-64 250.0 146 81.5
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 1.1e-64 250.0 146 82.2
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.4e-64 249.6 145 82.1
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.9e-64 249.2 147 82.3
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.9e-64 249.2 150 82.0
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 4.2e-64 248.1 146 80.8
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 7.2e-64 247.3 146 81.5
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 7.2e-64 247.3 145 77.9
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 7.2e-64 247.3 145 81.4
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 9.4e-64 246.9 145 78.6
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.6e-63 246.1 150 80.7
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 2.1e-63 245.7 145 79.3
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.1e-63 245.7 146 81.5
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 3.6e-63 245.0 145 78.6
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 3.6e-63 245.0 146 80.8
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 4.7e-63 244.6 145 78.6
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.1e-63 244.2 146 80.8
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 6.1e-63 244.2 146 80.1
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 8.0e-63 243.8 145 78.6
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.4e-62 243.0 142 81.0
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.4e-62 243.0 144 79.2
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 1.4e-62 243.0 145 80.0
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.4e-62 243.0 134 87.3
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 5.2e-62 241.1 145 76.6
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 8.8e-62 240.4 145 76.6
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.1e-61 240.0 144 79.2
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.5e-61 239.6 149 77.9
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 2.6e-61 238.8 146 78.1
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.6e-61 238.8 154 77.9
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.6e-61 238.8 146 78.1
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 2.6e-61 238.8 118 90.7
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.3e-61 238.4 143 78.3
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 5.7e-61 237.7 146 80.8
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 7.4e-61 237.3 148 78.4
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 7.4e-61 237.3 147 79.6
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 9.7e-61 236.9 146 77.4
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 9.7e-61 236.9 147 79.6
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 9.7e-61 236.9 146 78.8
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 1.3e-60 236.5 147 77.6
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.3e-60 236.5 145 79.3
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.3e-60 236.5 148 77.0
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.3e-60 236.5 118 89.0
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.7e-60 236.1 118 89.8
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.7e-60 236.1 118 89.8
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.7e-60 236.1 118 89.8
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.7e-60 236.1 113 93.8
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 2.2e-60 235.7 143 77.6
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 2.2e-60 235.7 118 89.0
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 2.2e-60 235.7 123 89.4
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 2.8e-60 235.3 135 80.7
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 6.3e-60 234.2 135 80.7
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 6.3e-60 234.2 139 79.1
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 8.2e-60 233.8 148 78.4
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 8.2e-60 233.8 148 78.4
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.1e-59 233.4 135 83.7
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 3.1e-59 231.9 118 88.1
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 3.1e-59 231.9 118 88.1
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 3.1e-59 231.9 118 88.1
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 4.1e-59 231.5 118 87.3
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 7.0e-59 230.7 137 78.1
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 7.0e-59 230.7 156 74.4
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 9.1e-59 230.3 132 80.3
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 9.1e-59 230.3 152 73.7
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 1.2e-58 229.9 138 78.3
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.2e-58 229.9 145 74.5
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.5e-58 228.4 136 78.7
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.5e-58 228.4 136 78.7
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.5e-58 228.0 136 78.7
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 5.9e-58 227.6 146 75.3
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 7.7e-58 227.3 120 86.7
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 7.7e-58 227.3 135 80.7
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 1.3e-57 226.5 141 78.7
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 2.2e-57 225.7 116 87.9
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 2.9e-57 225.3 120 82.5
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 6.5e-57 224.2 131 82.4
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 8.5e-57 223.8 147 75.5
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.1e-56 223.4 174 63.2
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.1e-56 223.4 174 63.2
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 1.9e-56 222.6 133 81.2
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 2.7e-55 218.8 116 83.6
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.7e-55 218.8 138 73.2
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 8.0e-55 217.2 131 77.9
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 2.3e-54 215.7 150 70.7
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 6.7e-54 214.2 123 82.9
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 4.4e-53 211.5 112 82.1
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 7.5e-53 210.7 116 83.6
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 9.7e-53 210.3 116 79.3
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 9.7e-53 210.3 123 79.7
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 4.8e-52 208.0 111 81.1
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 5.3e-51 204.5 156 69.9
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 5.3e-51 204.5 105 87.6
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 9.1e-51 203.8 114 78.9
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.0e-50 202.6 147 71.4
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.0e-49 200.3 118 72.9
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.0e-49 198.0 151 69.5
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.5e-49 197.6 143 67.8
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 8.5e-49 197.2 119 71.4
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.5e-48 195.7 104 81.7
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 4.2e-48 194.9 140 64.3
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 7.2e-48 194.1 104 80.8
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.2e-45 186.8 111 82.0
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 2.2e-44 182.6 151 62.9
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 3.5e-42 175.3 91 80.2
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.0e-41 173.7 97 86.6
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.3e-41 173.3 83 94.0
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 2.9e-41 172.2 115 73.9
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 3.3e-40 168.7 152 61.8
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.0e-38 163.7 92 82.6
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.8e-38 162.9 78 88.5
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.4e-35 153.3 83 84.3
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.7e-28 128.6 104 59.6
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.7e-28 128.6 86 77.9
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.2e-27 125.6 64 84.4
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 5.4e-27 124.8 61 83.6
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 5.8e-21 104.8 62 71.0
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 1.9e-19 99.8 52 86.5
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 3.0e-17 92.4 43 83.7
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 2.5e-16 89.4 74 71.6
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.3e-16 87.8 52 73.1
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 2.1e-15 86.3 57 77.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.4e-12 74.7 38 94.7
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.4e-11 71.6 40 75.0
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 9.2e-11 70.9 49 67.3
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 6.0e-10 68.2 42 69.0
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.7e-07 58.5 30 73.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 8.1e-07 57.8 46 67.4
Nn3g18376 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.4e-06 56.2 47 59.6


User provided reference genes

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