Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.8e-72 275.8 133 100.0
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.7e-49 198.0 97 95.9
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 7.7e-44 180.6 101 80.2
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 7.7e-44 180.6 101 80.2
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 1.0e-43 180.3 102 79.4
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 1.3e-43 179.9 97 82.5
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 1.1e-42 176.8 101 80.2
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 1.4e-42 176.4 99 83.8
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 1.9e-42 176.0 101 76.2
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.5e-42 175.6 102 75.5
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 2.5e-42 175.6 102 75.5
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 2.5e-42 175.6 102 78.4
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 4.2e-42 174.9 101 76.2
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 5.5e-42 174.5 102 76.5
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 5.5e-42 174.5 102 76.5
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 9.4e-42 173.7 101 78.2
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 1.6e-41 172.9 101 77.2
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 2.7e-41 172.2 101 76.2
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 3.6e-41 171.8 97 80.4
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 4.7e-41 171.4 101 75.2
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 4.7e-41 171.4 102 74.5
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 4.7e-41 171.4 97 80.4
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 6.1e-41 171.0 102 73.5
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 1.4e-40 169.9 104 73.1
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 2.3e-40 169.1 97 77.3
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 3.0e-40 168.7 101 75.2
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 3.0e-40 168.7 101 74.3
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 3.9e-40 168.3 97 78.4
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 5.2e-40 167.9 102 71.6
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 5.2e-40 167.9 102 73.5
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 5.2e-40 167.9 97 78.4
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 6.7e-40 167.5 102 71.6
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 8.8e-40 167.2 97 76.3
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 8.8e-40 167.2 109 68.8
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 1.1e-39 166.8 97 79.4
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 1.1e-39 166.8 102 72.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.0e-39 166.0 96 78.1
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 3.3e-39 165.2 101 72.3
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 5.7e-39 164.5 97 75.3
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 9.7e-39 163.7 95 77.9
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.7e-38 162.9 101 72.3
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 1.7e-38 162.9 102 69.6
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 1.7e-38 162.9 94 76.6
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 2.2e-38 162.5 98 76.5
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 2.2e-38 162.5 98 76.5
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 2.8e-38 162.2 97 75.3
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 2.8e-38 162.2 101 72.3
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.8e-38 162.2 101 72.3
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 2.8e-38 162.2 97 76.3
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 4.8e-38 161.4 96 76.0
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 6.3e-38 161.0 101 72.3
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 6.3e-38 161.0 96 76.0
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 8.2e-38 160.6 97 72.2
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 8.2e-38 160.6 101 71.3
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.1e-37 160.2 101 72.3
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 1.1e-37 160.2 102 73.5
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 1.4e-37 159.8 101 71.3
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 2.4e-37 159.1 97 71.1
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 2.4e-37 159.1 93 78.5
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 2.4e-37 159.1 97 72.2
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 3.1e-37 158.7 95 74.7
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 3.1e-37 158.7 97 72.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 4.1e-37 158.3 96 75.0
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 7.0e-37 157.5 101 68.3
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 7.0e-37 157.5 101 68.3
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 2.0e-36 156.0 101 68.3
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 2.0e-36 156.0 95 72.6
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 2.0e-36 156.0 100 70.0
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 2.6e-36 155.6 97 72.2
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 2.6e-36 155.6 98 74.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 4.5e-36 154.8 96 69.8
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 5.9e-36 154.5 96 71.9
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 5.9e-36 154.5 102 66.7
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 1.7e-35 152.9 97 74.2
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 5.0e-35 151.4 102 66.7
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 8.5e-35 150.6 100 69.0
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 1.1e-34 150.2 97 70.1
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.9e-34 149.4 96 68.8
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 1.9e-34 149.4 99 66.7
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 2.5e-34 149.1 123 65.0
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 4.2e-34 148.3 123 65.9
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 5.5e-34 147.9 101 67.3
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 7.2e-34 147.5 106 60.4
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 7.2e-34 147.5 101 64.4
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 9.4e-34 147.1 106 63.2
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 9.4e-34 147.1 106 60.4
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 9.4e-34 147.1 106 60.4
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 1.6e-33 146.4 106 60.4
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 2.1e-33 146.0 102 62.7
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 2.1e-33 146.0 106 59.4
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 2.1e-33 146.0 106 59.4
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 2.1e-33 146.0 106 59.4
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 3.6e-33 145.2 102 61.8
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 4.7e-33 144.8 105 60.0
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 6.1e-33 144.4 106 59.4
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.4e-32 143.3 97 67.0
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 3.0e-32 142.1 102 61.8
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 8.8e-32 140.6 104 64.4
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 1.2e-31 140.2 98 65.3
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 4.4e-31 138.3 99 63.6
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.7e-30 136.3 93 65.6
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 8.3e-30 134.0 101 61.4
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 2.4e-29 132.5 92 68.5
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 5.9e-28 127.9 89 60.7
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 5.9e-28 127.9 89 60.7
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 7.7e-28 127.5 104 58.7
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.8e-24 116.3 82 65.9
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.3e-22 110.2 97 53.6
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.8e-21 106.3 103 48.5
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 2.7e-20 102.4 91 53.8
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 2.9e-19 99.0 108 47.2
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 5.5e-18 94.7 72 56.9
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 9.5e-18 94.0 65 66.2
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 3.4e-15 85.5 106 40.6
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.1e-09 66.2 34 76.5
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 2.1e-09 66.2 34 76.5
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.8e-09 65.9 67 43.3
PRCOL_00000660 Prasinoderma coloniale HOM05D002634 ORTHO05D003100 2.0e-07 59.7 90 32.2
CDE02G1419 Ceratophyllum demersum HOM05D002634 ORTHO05D003100 4.4e-07 58.5 119 30.3
Pp3c13_5760 Physcomitrium patens HOM05D002634 ORTHO05D003100 7.5e-07 57.8 104 31.7
AagrBONN_evm.TU.Sc2ySwM_117.1119 Anthoceros agrestis HOM05D002634 ORTHO05D003100 1.3e-06 57.0 106 31.1
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 1.7e-06 56.6 99 33.3
HPP92_020480 Vanilla planifolia HOM05D002634 ORTHO05D003100 1.7e-06 56.6 108 31.5
ClCG01G017150 Citrullus lanatus HOM05D002634 ORTHO05D003100 2.2e-06 56.2 120 30.8
Potri.005G144400 Populus trichocarpa HOM05D002634 ORTHO05D003100 2.2e-06 56.2 119 29.4
SMO232G0112 Selaginella moellendorffii HOM05D005961 ORTHO05D007391 2.9e-06 55.8 98 31.6
Sed0007301 Sechium edule HOM05D002634 ORTHO05D003100 3.7e-06 55.5 120 30.0
Zm00001eb419800 Zea mays HOM05D002634 ORTHO05D003100 3.7e-06 55.5 107 28.0
CBR_g32362 Chara braunii HOM05D002634 ORTHO05D003100 6.4e-06 54.7 111 33.3
MELO3C007593.2 Cucumis melo HOM05D002634 ORTHO05D003100 6.4e-06 54.7 120 31.7
CsaV3_6G043670 Cucumis sativus L. HOM05D002634 ORTHO05D003100 6.4e-06 54.7 120 31.7
Glyma.11G051700 Glycine max HOM05D002634 ORTHO05D003100 6.4e-06 54.7 96 31.2
SMO118G0254 Selaginella moellendorffii HOM05D002634 ORTHO05D003100 6.4e-06 54.7 109 30.3
Sopen12g030530 Solanum pennellii HOM05D002634 ORTHO05D003100 6.4e-06 54.7 106 28.3
Solyc12g088630.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 8.3e-06 54.3 106 28.3


User provided reference genes

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