Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0010 Trochodendron aralioides HOM05D006113 ORTHO05D007828 2.8e-180 635.2 322 100.0
Nn3g17324 Nelumbo nucifera HOM05D006113 ORTHO05D007828 7.2e-120 434.5 309 71.2
CSS0010269 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 1.2e-114 417.2 325 70.5
Dinv28932 Davidia involucrata HOM05D006113 ORTHO05D007828 7.7e-114 414.5 332 67.8
Rhsim07G0124800 Rhododendron simsii HOM05D006113 ORTHO05D007828 1.1e-109 400.6 319 65.8
CSS0019238 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 3.3e-109 399.1 327 66.4
CSS0023186 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 3.3e-109 399.1 327 66.4
vmacro14161 Vaccinium macrocarpon HOM05D006113 ORTHO05D007828 8.2e-108 394.4 308 66.6
MD09G1232600 Malus domestica HOM05D006113 ORTHO05D007828 3.8e-105 385.6 297 64.3
PSO017G4443 Papaver somniferum HOM05D006113 ORTHO05D007828 1.9e-104 383.3 333 61.6
PSO478G3605 Papaver somniferum HOM05D006113 ORTHO05D007828 1.9e-104 383.3 333 61.6
Cfa012411 Carpinus fangiana HOM05D006113 ORTHO05D007828 2.5e-104 382.9 316 62.7
CiPaw.11G091200 Carya illinoinensis HOM05D006113 ORTHO05D007828 2.5e-104 382.9 306 64.4
Prupe.1G552500 Prunus persica HOM05D006113 ORTHO05D007828 1.2e-103 380.6 317 62.8
Thecc.03G231000 Theobroma cacao HOM05D006113 ORTHO05D007828 1.8e-102 376.7 310 61.0
GSVIVG01013180001 Vitis vinifera HOM05D006113 ORTHO05D007828 1.8e-102 376.7 315 64.8
Aqoxy3G00478 Aquilegia oxysepala HOM05D006113 ORTHO05D007828 2.3e-102 376.3 313 62.6
DCAR_008285 Daucus carota HOM05D006113 ORTHO05D007828 2.3e-102 376.3 277 69.3
EL10Ac1g02288 Beta vulgaris HOM05D006113 ORTHO05D007828 3.9e-102 375.6 278 65.8
Gorai.004G186900 Gossypium raimondii HOM05D006113 ORTHO05D007828 6.7e-102 374.8 306 61.1
CsaV3_3G049370 Cucumis sativus L. HOM05D006113 ORTHO05D007828 8.8e-102 374.4 312 62.5
Gohir.D08G178600 Gossypium hirsutum HOM05D006113 ORTHO05D007828 1.1e-101 374.0 306 60.8
MELO3C003389.2 Cucumis melo HOM05D006113 ORTHO05D007828 2.0e-101 373.2 295 64.1
Hund14417 Selenicereus undatus HOM05D006113 ORTHO05D007828 2.6e-101 372.9 319 62.4
CANSAT21G0754 Cannabis sativa HOM05D006113 ORTHO05D007828 1.7e-100 370.2 302 62.9
Manes.05G117026 Manihot esculenta HOM05D006113 ORTHO05D007828 3.7e-100 369.0 308 60.7
Cc08_g02430 Coffea canephora HOM05D006113 ORTHO05D007828 6.3e-100 368.2 309 63.4
COL.COLO4_17073 Corchorus olitorius HOM05D006113 ORTHO05D007828 6.3e-100 368.2 306 60.1
Ah.12g054610 Amaranthus hybridus HOM05D006113 ORTHO05D007828 8.2e-100 367.9 314 59.9
Gohir.A08G158300 Gossypium hirsutum HOM05D006113 ORTHO05D007828 8.2e-100 367.9 306 60.5
Lsat_1_v5_gn_3_16601 Lactuca sativa HOM05D006113 ORTHO05D007828 8.2e-100 367.9 295 64.4
Ciclev10031360m.g Citrus clementina HOM05D006113 ORTHO05D007828 1.1e-99 367.5 308 60.7
Eucgr.E00301 Eucalyptus grandis HOM05D006113 ORTHO05D007828 3.1e-99 365.9 320 59.4
Sed0027774 Sechium edule HOM05D006113 ORTHO05D007828 5.3e-99 365.2 308 60.7
PGSC0003DMG400020501 Solanum tuberosum HOM05D006113 ORTHO05D007828 9.1e-99 364.4 319 62.1
MBI18_g17018_MAGBIO Magnolia biondii HOM05D006113 ORTHO05D007828 1.6e-98 363.6 301 63.8
Oeu062745.2 Olea europaea HOM05D006113 ORTHO05D007828 2.0e-98 363.2 315 64.4
Nitab4.5_0000535g0010 Nicotiana tabacum HOM05D006113 ORTHO05D007828 3.5e-98 362.5 283 62.9
Sabra01G0112900 Salix brachista HOM05D006113 ORTHO05D007828 7.7e-98 361.3 318 59.7
Potri.003G089700 Populus trichocarpa HOM05D006113 ORTHO05D007828 1.0e-97 360.9 312 60.3
FvH4_6g31710 Fragaria vesca HOM05D006113 ORTHO05D007828 1.3e-97 360.5 318 60.1
HanXRQChr06g0167341 Helianthus annuus HOM05D006113 ORTHO05D007828 1.3e-97 360.5 318 60.7
TWI60G1370 Tripterygium wilfordii HOM05D006113 ORTHO05D007828 1.3e-97 360.5 280 62.9
ECA246G3200 Erigeron canadensis HOM05D006113 ORTHO05D007828 2.2e-97 359.8 326 60.4
FAN02G2000 Fragaria x ananassa HOM05D006113 ORTHO05D007828 2.2e-97 359.8 317 60.6
RcHm_v2.0_Chr6g0269051 Rosa chinensis HOM05D006113 ORTHO05D007828 2.9e-97 359.4 319 59.9
Sopen08g002980 Solanum pennellii HOM05D006113 ORTHO05D007828 5.0e-97 358.6 317 61.5
ClCG09G012180 Citrullus lanatus HOM05D006113 ORTHO05D007828 6.5e-97 358.2 308 60.1
QL12p006235 Quercus lobata HOM05D006113 ORTHO05D007828 6.5e-97 358.2 283 65.7
SGA_v2.0_scaffold385G50460 Striga asiatica HOM05D006113 ORTHO05D007828 6.5e-97 358.2 313 60.4
Peaxi162Scf00102g00639 Petunia axillaris HOM05D006113 ORTHO05D007828 1.1e-96 357.5 318 61.3
FAN09G0007 Fragaria x ananassa HOM05D006113 ORTHO05D007828 1.5e-96 357.1 316 60.1
CAN.G845.35 Capsicum annuum HOM05D006113 ORTHO05D007828 1.9e-96 356.7 324 59.0
Duzib205G1867 Durio zibethinus HOM05D006113 ORTHO05D007828 4.2e-96 355.5 306 59.2
Haze_08267 Corylus avellana HOM05D006113 ORTHO05D007828 7.2e-96 354.8 358 54.5
Sc22g0001480 Simmondsia chinensis HOM05D006113 ORTHO05D007828 7.2e-96 354.8 319 59.6
Potri.001G144500 Populus trichocarpa HOM05D006113 ORTHO05D007828 9.4e-96 354.4 311 58.8
HanXRQChr17g0535731 Helianthus annuus HOM05D006113 ORTHO05D007828 1.6e-95 353.6 326 58.9
TWI81G0082 Tripterygium wilfordii HOM05D006113 ORTHO05D007828 1.4e-94 350.5 320 56.2
FAN05G0306 Fragaria x ananassa HOM05D006113 ORTHO05D007828 4.0e-94 349.0 318 58.2
SalBow1G7584 Salvia bowleyana HOM05D006113 ORTHO05D007828 4.0e-94 349.0 315 59.0
MSTRG.12007 Avicennia marina HOM05D006113 ORTHO05D007828 8.8e-94 347.8 316 60.4
Atru.chr6.1754 Acer truncatum HOM05D006113 ORTHO05D007828 2.0e-93 346.7 269 63.6
Lj2g0019507 Lotus japonicus HOM05D006113 ORTHO05D007828 2.6e-93 346.3 316 58.2
PGR042G1735 Punica granatum HOM05D006113 ORTHO05D007828 7.5e-93 344.7 309 58.3
AUR62007248 Chenopodium quinoa HOM05D006113 ORTHO05D007828 8.2e-92 341.3 249 64.3
AUR62018751 Chenopodium quinoa HOM05D006113 ORTHO05D007828 8.2e-92 341.3 294 60.9
THA.LOC104807962 Tarenaya hassleriana HOM05D006113 ORTHO05D007828 8.2e-92 341.3 317 56.2
Migut.E01131 Erythranthe guttata HOM05D006113 ORTHO05D007828 9.1e-91 337.8 321 57.9
THA.LOC104814434 Tarenaya hassleriana HOM05D006113 ORTHO05D007828 7.7e-90 334.7 320 55.0
Carub.0001s3091 Capsella rubella HOM05D006113 ORTHO05D007828 2.9e-89 332.8 317 53.3
Aa31LG2G13450 Aethionema arabicum HOM05D006113 ORTHO05D007828 5.0e-89 332.0 317 51.7
AL1G46750 Arabidopsis lyrata HOM05D006113 ORTHO05D007828 6.5e-89 331.6 315 53.3
Thhalv10007401m.g Eutrema salsugineum HOM05D006113 ORTHO05D007828 1.1e-88 330.9 317 53.0
A05p24790 Brassica napus HOM05D006113 ORTHO05D007828 1.5e-88 330.5 314 52.9
BraA05t21362Z Brassica rapa HOM05D006113 ORTHO05D007828 1.5e-88 330.5 314 52.9
Nitab4.5_0000804g0060 Nicotiana tabacum HOM05D006113 ORTHO05D007828 1.5e-88 330.5 317 55.5
unitig_52.g17240 Utricularia gibba HOM05D006113 ORTHO05D007828 3.2e-88 329.3 317 57.4
AT1G32500 Arabidopsis thaliana HOM05D006113 ORTHO05D007828 9.4e-88 327.8 314 52.2
arahy.Tifrunner.gnm1.ann1.C9Y7N1 Arachis hypogaea HOM05D006113 ORTHO05D007828 2.1e-87 326.6 309 55.7
arahy.Tifrunner.gnm1.ann1.LSM77P Arachis hypogaea HOM05D006113 ORTHO05D007828 2.1e-87 326.6 309 55.7
BcaB03g13726 Brassica carinata HOM05D006113 ORTHO05D007828 2.1e-87 326.6 316 52.5
CARHR031950 Cardamine hirsuta HOM05D006113 ORTHO05D007828 4.7e-87 325.5 323 52.0
Lalb_Chr05g0214021 Lupinus albus HOM05D006113 ORTHO05D007828 1.0e-86 324.3 278 61.2
BolC5t32582H Brassica oleracea HOM05D006113 ORTHO05D007828 2.3e-86 323.2 319 51.1
Lj8A291G57 Lonicera japonica HOM05D006113 ORTHO05D007828 2.3e-86 323.2 298 58.1
BcaC05g27850 Brassica carinata HOM05D006113 ORTHO05D007828 1.5e-85 320.5 319 50.5
C05p38480 Brassica napus HOM05D006113 ORTHO05D007828 1.5e-85 320.5 319 50.5
Sp1g28400 Schrenkiella parvula HOM05D006113 ORTHO05D007828 3.4e-85 319.3 325 49.8
PSO478G2563 Papaver somniferum HOM05D006113 ORTHO05D007828 1.4e-83 313.9 319 52.7
Cpa.g.sc90.55 Carica papaya HOM05D006113 ORTHO05D007828 1.4e-78 297.4 301 53.2
Psat2g173560 Pisum sativum HOM05D006113 ORTHO05D007828 3.1e-75 286.2 301 52.8
Medtr5g014290 Medicago truncatula HOM05D006113 ORTHO05D007828 1.9e-72 276.9 311 51.1
HPP92_003349 Vanilla planifolia HOM05D006113 ORTHO05D007828 3.0e-70 269.6 285 52.3
TPR.G17447 Trifolium pratense HOM05D006113 ORTHO05D007828 3.7e-68 262.7 257 54.9
Glyma.11G042400 Glycine max HOM05D006113 ORTHO05D007828 5.4e-67 258.8 299 48.5
Phvul.002G006200 Phaseolus vulgaris HOM05D006113 ORTHO05D007828 2.3e-65 253.4 294 46.6
VMungo1215G1026 Vigna mungo HOM05D006113 ORTHO05D007828 6.6e-65 251.9 302 46.4
PSO782G1575 Papaver somniferum HOM05D006113 ORTHO05D007828 1.9e-64 250.4 327 46.2
Solyc08g007010.4 Solanum lycopersicum HOM05D006113 ORTHO05D007828 2.5e-64 250.0 177 67.2
Ca_24644_v3 Cicer arietinum L. HOM05D006113 ORTHO05D007828 1.0e-57 228.0 179 60.3
BcaC05g27849 Brassica carinata HOM05D006113 ORTHO05D007828 3.3e-56 223.0 292 41.1
Mapoly0097s0089 Marchantia polymorpha HOM05D006113 ORTHO05D007828 7.3e-56 221.9 287 42.2
SEGI_13135 Sequoiadendron giganteum HOM05D006113 ORTHO05D007828 1.2e-55 221.1 308 40.9
Zm00001eb335220 Zea mays HOM05D006113 ORTHO05D007828 6.0e-50 202.2 307 42.3
Os01g0127300 Oryza sativa ssp. japonica HOM05D006113 ORTHO05D007828 1.2e-47 194.5 289 41.2
SMO356G0179 Selaginella moellendorffii HOM05D006113 ORTHO05D007828 4.0e-46 189.5 301 37.9
Pp3c12_11290 Physcomitrium patens HOM05D006113 ORTHO05D007828 2.4e-43 180.3 290 36.9
AagrBONN_evm.TU.Sc2ySwM_228.790 Anthoceros agrestis HOM05D006113 ORTHO05D007828 1.3e-41 174.5 291 36.1
CBR_g5705 Chara braunii HOM05D006113 ORTHO05D007828 1.9e-35 154.1 275 36.4
CBR_g5706 Chara braunii HOM05D006113 ORTHO05D007828 1.3e-33 147.9 274 34.7
Glyma.01G199500 Glycine max HOM05D006113 ORTHO05D007828 4.8e-31 139.4 156 46.8
ATR0680G232 Amborella trichopoda HOM05D006113 ORTHO05D007828 4.8e-23 112.8 93 57.0
PRCOL_00003470 Prasinoderma coloniale HOM05D006113 ORTHO05D007828 2.4e-19 100.5 308 27.9
AUR62019423 Chenopodium quinoa HOM05D006113 ORTHO05D031674 3.2e-19 100.1 77 61.0
Pp3c4_5260 Physcomitrium patens HOM05D006113 ORTHO05D007828 1.6e-18 97.8 216 31.0
MELO3C003388.2 Cucumis melo HOM05D006113 ORTHO05D007828 6.2e-15 85.9 94 46.8
GSVIVG01015822001 Vitis vinifera HOM05D006113 ORTHO05D007828 8.4e-12 75.5 48 72.9


User provided reference genes

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