Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0925 Trochodendron aralioides HOM05D005315 ORTHO05D006589 4.0e-84 314.7 156 100.0
Duzib138G1810 Durio zibethinus HOM05D005315 ORTHO05D006589 4.9e-58 228.0 136 82.4
Gohir.D08G137700 Gossypium hirsutum HOM05D005315 ORTHO05D006589 1.9e-57 226.1 136 80.9
Gorai.004G141000 Gossypium raimondii HOM05D005315 ORTHO05D006589 1.9e-57 226.1 136 80.9
Dinv33007 Davidia involucrata HOM05D005315 ORTHO05D006589 2.4e-57 225.7 136 80.9
QL12p024404 Quercus lobata HOM05D005315 ORTHO05D006589 4.2e-57 224.9 149 75.8
Lalb_Chr04g0259741 Lupinus albus HOM05D005315 ORTHO05D006589 5.4e-57 224.6 149 73.8
Nn1g09463 Nelumbo nucifera HOM05D005315 ORTHO05D006589 5.4e-57 224.6 149 73.2
Nn1g09466 Nelumbo nucifera HOM05D005315 ORTHO05D006589 5.4e-57 224.6 149 73.2
QL10p015953 Quercus lobata HOM05D005315 ORTHO05D006589 9.3e-57 223.8 149 74.5
Prupe.8G254400 Prunus persica HOM05D005315 ORTHO05D006589 1.2e-56 223.4 136 78.7
Gohir.A08G116900 Gossypium hirsutum HOM05D005315 ORTHO05D006589 2.1e-56 222.6 136 79.4
Thecc.01G292600 Theobroma cacao HOM05D005315 ORTHO05D006589 2.7e-56 222.2 136 80.1
Phvul.001G203400 Phaseolus vulgaris HOM05D005315 ORTHO05D006589 4.6e-56 221.5 149 73.8
CiPaw.07G101900 Carya illinoinensis HOM05D005315 ORTHO05D006589 6.0e-56 221.1 136 80.1
Prupe.2G090200 Prunus persica HOM05D005315 ORTHO05D006589 7.9e-56 220.7 136 77.9
Cfa006013 Carpinus fangiana HOM05D005315 ORTHO05D006589 1.0e-55 220.3 136 80.1
Cpa.g.sc9.185 Carica papaya HOM05D005315 ORTHO05D006589 1.3e-55 219.9 135 77.8
MBI02_g41662_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 1.8e-55 219.5 149 74.5
Eucgr.K03447 Eucalyptus grandis HOM05D005315 ORTHO05D006589 2.3e-55 219.2 149 71.8
Glyma.03G210300 Glycine max HOM05D005315 ORTHO05D006589 3.0e-55 218.8 149 72.5
Lj1g0005840 Lotus japonicus HOM05D005315 ORTHO05D006589 5.1e-55 218.0 149 71.8
VMungo1383G1398 Vigna mungo HOM05D005315 ORTHO05D006589 5.1e-55 218.0 149 73.2
arahy.Tifrunner.gnm1.ann1.NZ3ZKL Arachis hypogaea HOM05D005315 ORTHO05D006589 6.7e-55 217.6 148 73.0
Haze_04835 Corylus avellana HOM05D005315 ORTHO05D006589 6.7e-55 217.6 136 78.7
Gohir.D12G008800 Gossypium hirsutum HOM05D005315 ORTHO05D006589 6.7e-55 217.6 136 78.7
Oeu028371.1 Olea europaea HOM05D005315 ORTHO05D006589 6.7e-55 217.6 137 78.1
CAN.G276.6 Capsicum annuum HOM05D005315 ORTHO05D006589 8.7e-55 217.2 136 78.7
DCAR_003965 Daucus carota HOM05D005315 ORTHO05D006589 1.1e-54 216.9 149 71.1
Nitab4.5_0013619g0010 Nicotiana tabacum HOM05D005315 ORTHO05D008125 1.1e-54 216.9 149 71.8
CsaV3_7G028820 Cucumis sativus L. HOM05D005315 ORTHO05D006589 1.9e-54 216.1 136 76.5
Glyma.19G207500 Glycine max HOM05D005315 ORTHO05D006589 4.3e-54 214.9 149 70.5
arahy.Tifrunner.gnm1.ann1.EUG2WG Arachis hypogaea HOM05D005315 ORTHO05D006589 5.6e-54 214.5 148 71.6
CSS0021362 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 5.6e-54 214.5 150 73.3
CSS0027333 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 5.6e-54 214.5 150 73.3
COL.COLO4_08010 Corchorus olitorius HOM05D005315 ORTHO05D006589 7.4e-54 214.2 135 76.3
Aqoxy2G03077 Aquilegia oxysepala HOM05D005315 ORTHO05D006589 1.3e-53 213.4 140 73.6
Gorai.008G008700 Gossypium raimondii HOM05D005315 ORTHO05D006589 1.3e-53 213.4 136 77.2
MD03G1278200 Malus domestica HOM05D005315 ORTHO05D006589 1.3e-53 213.4 136 76.5
Ah.12g052040 Amaranthus hybridus HOM05D005315 ORTHO05D006589 2.1e-53 212.6 151 66.2
ClCG09G006320 Citrullus lanatus HOM05D005315 ORTHO05D006589 2.1e-53 212.6 136 75.0
MELO3C016054.2 Cucumis melo HOM05D005315 ORTHO05D006589 2.1e-53 212.6 136 75.7
MD11G1300200 Malus domestica HOM05D005315 ORTHO05D006589 2.8e-53 212.2 149 70.5
Sed0018657 Sechium edule HOM05D005315 ORTHO05D006589 3.7e-53 211.8 136 74.3
Sed0022397 Sechium edule HOM05D005315 ORTHO05D006589 3.7e-53 211.8 138 74.6
FAN20G2356 Fragaria x ananassa HOM05D005315 ORTHO05D006589 6.2e-53 211.1 136 74.3
PSO170G6158 Papaver somniferum HOM05D005315 ORTHO05D006589 6.2e-53 211.1 136 75.0
Nitab4.5_0008505g0010 Nicotiana tabacum HOM05D005315 ORTHO05D006589 8.1e-53 210.7 136 76.5
Rhsim13G0016000 Rhododendron simsii HOM05D005315 ORTHO05D006589 8.1e-53 210.7 147 72.1
Solyc04g053080.4 Solanum lycopersicum HOM05D005315 ORTHO05D006589 8.1e-53 210.7 136 77.2
Sopen04g023370 Solanum pennellii HOM05D005315 ORTHO05D006589 8.1e-53 210.7 136 77.2
TWI59G0122 Tripterygium wilfordii HOM05D005315 ORTHO05D006589 8.1e-53 210.7 135 76.3
PGSC0003DMG400016587 Solanum tuberosum HOM05D005315 ORTHO05D006589 1.1e-52 210.3 136 76.5
PSO210G5824 Papaver somniferum HOM05D005315 ORTHO05D006589 1.8e-52 209.5 136 74.3
Peaxi162Scf01132g00228 Petunia axillaris HOM05D005315 ORTHO05D006589 1.8e-52 209.5 136 75.7
Lj6A760G44 Lonicera japonica HOM05D005315 ORTHO05D006589 2.4e-52 209.1 149 72.5
Medtr7g108240 Medicago truncatula HOM05D005315 ORTHO05D006589 2.4e-52 209.1 148 69.6
A09p54790 Brassica napus HOM05D005315 ORTHO05D006589 3.1e-52 208.8 142 72.5
FvH4_2g14201 Fragaria vesca HOM05D005315 ORTHO05D006589 3.1e-52 208.8 132 75.8
FAN24G2129 Fragaria x ananassa HOM05D005315 ORTHO05D006589 3.1e-52 208.8 132 75.8
Manes.05G066800 Manihot esculenta HOM05D005315 ORTHO05D006589 3.1e-52 208.8 136 72.8
Potri.014G134100 Populus trichocarpa HOM05D005315 ORTHO05D006589 4.0e-52 208.4 149 69.1
Sc24g0001270 Simmondsia chinensis HOM05D005315 ORTHO05D006589 4.0e-52 208.4 149 67.8
MSTRG.16494 Avicennia marina HOM05D005315 ORTHO05D006589 5.3e-52 208.0 149 68.5
C08p37650 Brassica napus HOM05D005315 ORTHO05D006589 5.3e-52 208.0 142 72.5
Nitab4.5_0000431g0150 Nicotiana tabacum HOM05D005315 ORTHO05D006589 5.3e-52 208.0 149 69.8
Thhalv10006094m.g Eutrema salsugineum HOM05D005315 ORTHO05D006589 6.9e-52 207.6 139 73.4
EL10Ac1g00719 Beta vulgaris HOM05D005315 ORTHO05D006589 9.0e-52 207.2 151 66.2
Medtr4g104580 Medicago truncatula HOM05D005315 ORTHO05D006589 9.0e-52 207.2 148 68.9
Psat3g025640 Pisum sativum HOM05D005315 ORTHO05D006589 9.0e-52 207.2 135 74.8
ATR0564G214 Amborella trichopoda HOM05D005315 ORTHO05D006589 1.2e-51 206.8 136 74.3
Carub.0005s2959 Capsella rubella HOM05D005315 ORTHO05D006589 1.2e-51 206.8 142 71.8
Atru.chr4.1184 Acer truncatum HOM05D005315 ORTHO05D006589 1.5e-51 206.5 149 67.1
BraA09t40888Z Brassica rapa HOM05D005315 ORTHO05D006589 1.5e-51 206.5 136 74.3
Nitab4.5_0000492g0210 Nicotiana tabacum HOM05D005315 ORTHO05D006589 1.5e-51 206.5 137 76.6
Hma1.2p1_0209F.1_g088950 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 2.0e-51 206.1 136 75.0
ATR0665G323 Amborella trichopoda HOM05D005315 ORTHO05D006589 2.6e-51 205.7 136 73.5
BolC8t51348H Brassica oleracea HOM05D005315 ORTHO05D006589 2.6e-51 205.7 136 74.3
AUR62002550 Chenopodium quinoa HOM05D005315 ORTHO05D006589 2.6e-51 205.7 149 65.8
RcHm_v2.0_Chr6g0292881 Rosa chinensis HOM05D005315 ORTHO05D006589 2.6e-51 205.7 136 72.8
Sp5g00580 Schrenkiella parvula HOM05D005315 ORTHO05D006589 2.6e-51 205.7 139 71.9
TPR.G32271 Trifolium pratense HOM05D005315 ORTHO05D006589 2.6e-51 205.7 149 67.8
BcaC02g10325 Brassica carinata HOM05D005315 ORTHO05D006589 4.5e-51 204.9 142 70.4
C04p30300 Brassica napus HOM05D005315 ORTHO05D006589 4.5e-51 204.9 142 70.4
BolC4t24563H Brassica oleracea HOM05D005315 ORTHO05D006589 4.5e-51 204.9 142 70.4
Ca_09122_v3 Cicer arietinum L. HOM05D005315 ORTHO05D006589 4.5e-51 204.9 134 75.4
Sabra14G0100000 Salix brachista HOM05D005315 ORTHO05D006589 4.5e-51 204.9 149 68.5
BcaB02g08087 Brassica carinata HOM05D005315 ORTHO05D006589 5.8e-51 204.5 136 73.5
Manes.01G214900 Manihot esculenta HOM05D005315 ORTHO05D006589 7.6e-51 204.1 136 72.1
CANSAT25G3366 Cannabis sativa HOM05D005315 ORTHO05D006589 9.9e-51 203.8 137 73.0
A04p00430 Brassica napus HOM05D005315 ORTHO05D006589 2.2e-50 202.6 142 71.1
BraA04t15762Z Brassica rapa HOM05D005315 ORTHO05D006589 2.2e-50 202.6 142 71.1
vmacro02497 Vaccinium macrocarpon HOM05D005315 ORTHO05D006589 2.2e-50 202.6 147 68.7
Aa31LG10G16750 Aethionema arabicum HOM05D005315 ORTHO05D006589 2.9e-50 202.2 139 71.2
Hma1.2p1_0399F.1_g144060 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 2.9e-50 202.2 136 71.3
AUR62029964 Chenopodium quinoa HOM05D005315 ORTHO05D006589 4.9e-50 201.4 149 64.4
AT3G62940 Arabidopsis thaliana HOM05D005315 ORTHO05D006589 6.4e-50 201.1 142 70.4
CARHR173230 Cardamine hirsuta HOM05D005315 ORTHO05D006589 8.4e-50 200.7 137 71.5
AL5G45720 Arabidopsis lyrata HOM05D005315 ORTHO05D006589 1.1e-49 200.3 142 69.7
Ciclev10021031m.g Citrus clementina HOM05D005315 ORTHO05D006589 1.4e-49 199.9 135 70.4
unitig_26.g9038 Utricularia gibba HOM05D005315 ORTHO05D006589 2.4e-49 199.1 127 76.4
Hund18046 Selenicereus undatus HOM05D005315 ORTHO05D006589 7.1e-49 197.6 148 66.2
Zm00001eb212540 Zea mays HOM05D005315 ORTHO05D006589 7.1e-49 197.6 136 69.9
HPP92_002250 Vanilla planifolia HOM05D005315 ORTHO05D006589 1.6e-48 196.4 136 69.9
SGA_v2.0_scaffold304G47908 Striga asiatica HOM05D005315 ORTHO05D006589 2.7e-48 195.7 134 70.1
Lsat_1_v5_gn_5_90141 Lactuca sativa HOM05D005315 ORTHO05D006589 3.5e-48 195.3 140 70.0
Os04g0619500 Oryza sativa ssp. japonica HOM05D005315 ORTHO05D006589 3.0e-47 192.2 135 68.9
THA.LOC104802209 Tarenaya hassleriana HOM05D005315 ORTHO05D006589 5.1e-47 191.4 132 69.7
ECA247G4081 Erigeron canadensis HOM05D005315 ORTHO05D006589 1.1e-46 190.3 139 67.6
MBI13_g04790_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 1.9e-46 189.5 144 69.4
ECA234G3298 Erigeron canadensis HOM05D005315 ORTHO05D006589 3.3e-46 188.7 139 67.6
HanXRQChr12g0357681 Helianthus annuus HOM05D005315 ORTHO05D006589 9.6e-46 187.2 140 66.4
Actinidia32232 Actinidia chinensis HOM05D005315 ORTHO05D006589 4.0e-44 181.8 123 72.4
Sc24g0001280 Simmondsia chinensis HOM05D005315 ORTHO05D006589 4.0e-44 181.8 131 67.9
SEGI_33648 Sequoiadendron giganteum HOM05D005315 ORTHO05D006589 5.3e-44 181.4 137 66.4
PGR044G2036 Punica granatum HOM05D005315 ORTHO05D006589 9.0e-44 180.6 135 65.9
Migut.B00780 Erythranthe guttata HOM05D005315 ORTHO05D006589 5.8e-43 177.9 140 62.9
Duzib133G0389 Durio zibethinus HOM05D005315 ORTHO05D006589 3.0e-39 165.6 136 63.2
Mapoly0036s0154 Marchantia polymorpha HOM05D005315 ORTHO05D006589 3.3e-38 162.2 146 57.5
Pp3c15_4060 Physcomitrium patens HOM05D005315 ORTHO05D006589 1.3e-34 150.2 139 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5144 Anthoceros agrestis HOM05D005315 ORTHO05D006589 2.9e-34 149.1 133 57.1
CBR_g50012 Chara braunii HOM05D005315 ORTHO05D006589 1.4e-33 146.7 138 52.9
Cc07_g16220 Coffea canephora HOM05D005315 ORTHO05D006589 4.6e-32 141.7 147 51.0
HanXRQChr16g0511311 Helianthus annuus HOM05D005315 ORTHO05D006589 7.9e-32 141.0 140 52.1
RcHm_v2.0_Chr5g0001231 Rosa chinensis HOM05D005315 ORTHO05D006589 8.8e-31 137.5 131 54.2
RcHm_v2.0_Chr3g0496291 Rosa chinensis HOM05D005315 ORTHO05D006589 3.3e-30 135.6 129 54.3
SMO196G0226 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 6.9e-28 127.9 134 51.5
SMO196G0254 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 1.4e-25 120.2 120 53.3
Cre01.g028550 Chlamydomonas reinhardtii HOM05D005315 ORTHO05D006589 2.5e-25 119.4 133 45.9
SMO234G0054 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 7.2e-25 117.9 120 52.5
GSVIVG01010986001 Vitis vinifera HOM05D005315 ORTHO05D006589 1.5e-22 110.2 56 85.7
CDE04G3078 Ceratophyllum demersum HOM05D005315 ORTHO05D006589 2.6e-22 109.4 85 65.9
arahy.Tifrunner.gnm1.ann1.UST23B Arachis hypogaea HOM05D005315 ORTHO05D006589 1.8e-20 103.2 129 45.7
PRCOL_00001709 Prasinoderma coloniale HOM05D005315 ORTHO05D006589 5.3e-20 101.7 133 39.8
MCO04G021 Micromonas commoda HOM05D005315 ORTHO05D006589 7.7e-19 97.8 130 41.5
SHI20216 Sapria himalayana HOM05D005315 ORTHO05D006589 1.4e-15 87.0 151 33.8
EL10Ac3g06247 Beta vulgaris HOM05D005315 ORTHO05D006589 5.2e-15 85.1 62 66.1
RcHm_v2.0_Chr6g0247511 Rosa chinensis HOM05D005315 ORTHO05D006589 1.3e-10 70.5 49 69.4
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 1.0e-07 60.8 115 38.3
FAN14G4381 Fragaria x ananassa HOM05D007165 ORTHO05D008978 1.2e-06 57.4 131 27.5
Os04g0670400 Oryza sativa ssp. japonica HOM05D006446 ORTHO05D007832 2.0e-06 56.6 111 31.5
PRCOL_00000140 Prasinoderma coloniale HOM05D005315 ORTHO05D007832 2.0e-06 56.6 105 29.5
BcaB02g07311 Brassica carinata HOM05D005315 ORTHO05D006589 2.6e-06 56.2 71 52.1
FAN02G1372 Fragaria x ananassa HOM05D007165 ORTHO05D008978 2.6e-06 56.2 126 26.2
THA.LOC104827244 Tarenaya hassleriana HOM05D006446 ORTHO05D007832 5.7e-06 55.1 117 29.9
FvH4_6g12160 Fragaria vesca HOM05D007165 ORTHO05D008978 7.5e-06 54.7 131 26.0


User provided reference genes

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