Gene: AT3G62940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G62940
  • Transcript Identifier AT3G62940.2
  • Gene Type Coding gene
  • Location Chr3 : 23263106-23264245 : negative

Gene Family Information

  • ID HOM05D005315
  • #Genes/#Species 143/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G62940.2
  • Alias OTU5,ovarian tumor domain (OTU)-containing DUB (deubiquitilating enzyme) 5
  • uniprot Q9LYC7

Descriptions

  • Description Cysteine proteinases superfamily protein
  • Computational description Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 4424 Blast hits to 3467 proteins in 474 species: Archae - 10; Bacteria - 494; Metazoa - 1270; Fungi - 452; Plants - 292; Viruses - 20; Other Eukaryotes - 1886 (source: NCBI BLink).
  • Computational description Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 5815 Blast hits to 4395 proteins in 552 species: Archae - 16; Bacteria - 640; Metazoa - 1732; Fungi - 585; Plants - 331; Viruses - 22; Other Eukaryotes - 2489 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
IBA
Gene Ontologyprotein deubiquitination1
GO:0006508
IEA
GOA Databaseproteolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004843
IEA
GOA Databasethiol-dependent deubiquitinase
GO:0004843
IBA
Gene Ontologythiol-dependent deubiquitinase1
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008234
IEA
GOA Databasecysteine-type peptidase activity
GO:0008233
IEA
GOA Databasepeptidase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038765 Papain-like cysteine peptidase superfamily
IPR003323 OTU domain
Mapman id Description
19.2.3.1.2.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.ubiquitin deconjugation.OTU deubiquitinase activities.deubiquitinase (OTU5)